Greetings all, I want to select the CDR3 region.The CDR3 region is calculated and stored excel file as follows:
PDBID | CHAIN | Length | Sequence | CDR3 1uj3 A 215 DI.... 98 lqhgespyt 97 1uj3 B 217 QV... 97 ardsgyamdy 106 As you can notice ,the CDR3 range is given with relative to the chain.(residue number) I tried to select the CDR3 region on chain A as: >select :a and (resno > 97 and resno < 97) - (1) >color red >select :b and (resno >97 and resno < 106) - (2) >color green Here the query 1,works fine as its the first chain in PDB file. But the query 2,doesn't work because the residue no 97 is relative.That mean the actual query must be something like : >select :b and (resno > (97 + 215) and resno < (106+215) Here I have to add the offset value 215 (the lenth of the chain A) to select the correct residues of chain B. Is there built in method todo this in JMol without calculating the offset..etc.. Simply that means,to select the residues number relative to the concerned chain. Thanks in advance. umanga ------------------------------------------------------------------------------ SF.Net email is Sponsored by MIX09, March 18-20, 2009 in Las Vegas, Nevada. The future of the web can't happen without you. Join us at MIX09 to help pave the way to the Next Web now. Learn more and register at http://ad.doubleclick.net/clk;208669438;13503038;i?http://2009.visitmix.com/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
