Just noticed you already linked me to the files. Thanks! I'll try that.
Eran
On Thu, Jan 22, 2009 at 3:57 PM, Eran Hodis <eranho...@gmail.com> wrote:
> Thanks Bob, I'll give this a go when the new version is released and
> report back to you.
> Eran
>
>
> On Thu, Jan 22, 2009 at 2:16 AM, Robert Hanson <hans...@stolaf.edu> wrote:
>
>> Jmol 11.7.22 has a new option for translate:
>>
>> translate x|y|z x.x nm|angstroms
>>
>> translate x 2.5 nm
>> translate y 25 angstroms
>> translate z 1.0 ang
>>
>> (only the first character, "n" or "a", is recognized)
>>
>> For x and y the result is to move the model that many angstroms or
>> nanometers. For z the result is to change the zoom such that the width
>> of the display at model center is (approximately) that many angstroms
>> less -- resulting in the illusion of zoom "by that many angstroms". (I
>> think...you tell me!)
>>
>> Maximum values are +/-100 units
>>
>> For now, uploaded to http://chemapps.stolaf.edu/jmol/docs/examples-11
>>
>> see
>>
>> http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.jar
>>
>>
>>
>>
>>
>> Bob
>>
>>
>>
>>
>>
>>
>> On Wed, Jan 21, 2009 at 2:52 PM, Robert Hanson <hans...@stolaf.edu>
>> wrote:
>> > Eran, the zoom is by percent, where 100% is the distance of the edge
>> > of a cube containing the entire model. So zoom 100% allows full
>> > rotation of the model within the window (provided you also SET
>> > ZOOMLARGE FALSE) And 50% gets you twice the width as zoom 100%. These
>> > dimensions can be determined by looking at
>> >
>> > $ getproperty "boundboxinfo"
>> >
>> > boundboxinfo
>> > center {10.5935 10.2105 6.0790005}
>> > vector {13.6905 10.7265005 13.500999}
>> > corner1 {24.284 20.937 19.58}
>> > corner0 {-3.0970001 -0.51600075 -7.4219995}
>> >
>> > or, for example:
>> >
>> > $ x=getproperty("boundboxinfo","corner1")
>> > $ print x
>> > {24.284 20.937 19.58}
>> >
>> > var x = show("boundbox")
>> >
>> >
>> > On Wed, Jan 21, 2009 at 7:56 AM, Eran Hodis <eranho...@gmail.com>
>> wrote:
>> >> Does anyone know how to translate (in either the x or the y axis) by a
>> >> specific number of Angstroms? Also is it possible to zoom in/out by a
>> >> specific number of Angstroms?
>> >
>> > It's not exactly clear how that would work with translation, as the
>> > front part is generally at a different scale than the back part, but
>> > perhaps it could be defined in terms of the center. That's an idea.
>> >
>> > translate x 0.3 [nm|angstroms]
>> >
>> >> Thanks,
>> >> Eran
>> >>
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>> >>
>> >
>> >
>> >
>> > --
>> > Robert M. Hanson
>> > Professor of Chemistry
>> > St. Olaf College
>> > 1520 St. Olaf Ave.
>> > Northfield, MN 55057
>> > http://www.stolaf.edu/people/hansonr
>> > phone: 507-786-3107
>> >
>> >
>> > If nature does not answer first what we want,
>> > it is better to take what answer we get.
>> >
>> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>> >
>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>> ------------------------------------------------------------------------------
>> This SF.net email is sponsored by:
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>
>
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