I tried this suggestion and it works in version 11. I also wanted to
connect the sidechains to their alpha carbons so I did this.
select protien;
wireframe off;
spacefill off;
cartoons on;
select sidechain and (within(group,within(4.0,glc)));
select selected or (*.CA and within(2.0,selected));
spacefill 20%;
wireframe 0.15;
Now I have a view of a ligand in a ribbon structure that has
sidechains growing out of the ribbon that define the active site.
Thanks Paul and Angel,
-Dan
On Jan 29, 2009, at - January 29 - 3:49 PM, Angel Herráez wrote:
> Hi Dan
>
> I've found a way in 11.6, not sure if it will work in 11.0, but
> could be:
>
> First, select your atoms by distance, or assign them to a custom set
> (using "define")
> Then, do
>
> z = {selected}.resno;
> select res...@z and sidechain;
>
> ("z" is a Jmol user variable, can be named anything)
>
> That's it!
> Oh wait, that works because my test has only one atom selected. If
> several residues are
> affected, it won't. Can you do it one residue at a time?
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