As more of an "implementor" and end-user than a developer I would agree that yes, this would be strongly welcomed! CCSDs ReLiBase does this, but again that is far from user friendly or open source (and ReLiBase+ is exorbitantly priced)
Good luck, Tom On Apr 2, 2009, at 7:23 AM, Chris Larsen <[email protected]> wrote: > All, > > I am attempting to write up a structure biology proposal for the > NIH...and just trying to establish JMol capabilities here. > > Would you al agree that the following function does not exist in Jmol? > > 1 Select residues in a protein's catalytic group > 2 Note positions relative to each other > 3 Search all of PDB, for that spatial arrangement of residues > 4 Return back list of of PDB IDs with rms deviation, as a table > > This is basically blast but for structure. I've gotten some static > from review about this but I think a plug in would be really welcomed. > Its sequence agnostic. What do you think? If we could get funding for > this, it would add to the developer squad already on the team. Let me > know please. I'm not talking about SYBYL, I'd like something for the > masses to use easily...Highlight three things and press a button to > launch. > > Further I'd like the spirit of this request to remain open source > please, but the idea is mentioned in straight up confidence to this > group and is already written up, so no poaching eh? We all have a lot > on our plates but JMol is a really good effort I'd like to support. > > Cheers, > > Chris Larsen > > > -- > ** Vecna's Maryland office moved 11/6/08. > My new phone, fax, and address are below.** > > Christopher Larsen, Ph.D. > Sr. Scientist / Grants Manager > Vecna Technologies > 6404 Ivy Lane #500 > Greenbelt, MD 20740 > Phone: (240) 965-4525 > Fax: (240) 965-4507 > 240-737-1625 > > > --- > --- > --- > --------------------------------------------------------------------- > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------------ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
