I don't think that will work, Angel. The cube file value being mapped will be the same as the cube file generating the isosurface - iso meaning "same value" so that the same value will be mapped. It will just look like a blur.
Sergey, there's no simple way to do this. If using the applet you can use MAP FUNCTIONXY and then provide a function that simply returns the Z value. It's an odd request. May I ask what use that would be? Bob 2009/4/6 Angel Herráez <[email protected]> > Hi Sergey > > Yes, it think it can be done. I haven't worked with cube files, but I have > done coloring by Z in > math functions. You must use the keyword "map" in "isosurface" and, after > that, repeat the > parameters given for the surface. > There should be info on this in the jmol-users list archive. > > This is my example, see if you can adapt it to your case: > > isosurface myS functionXY "myF" {x y z} {-50 1 0 0) {50 0 1 0} {23 0 0 1} > fullyLit map functionXY "myF" {x y z} {-50 1 0 0) {50 0 1 0} {23 0 0 1} > > So, you may try something like > > isosurface value -0.6 "filename.cube" map "filename.cube" > > > > > ------------------------------------------------------------------------------ > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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