Hmm. Curious. http://web.me.com/jhansen4/iWeb/Jmol/JmolPlusSVG.xhtml is
working fine now for me with Firefox 3.0.10/Windows XP. I did go ahead and
add that createElementNS business to Jmol.js, but that doesn't relate to
this problem, I think.
Bob
On Thu, May 7, 2009 at 12:26 PM, Jeff Hansen <[email protected]> wrote:
> I've done that. Makes no difference. Firefox is still showing the same
> error.
> uncaught exception: String contains an invalid character
> (NS_ERROR_DOM_INVALID_CHARACTER_ERR)
> [Break on this error] var e = (tagname == closetag || tagnam... ? "" :
> document.createElement(tagname))
>
>
> ***********************************************
> Jeff Hansen
> Department of Chemistry and Biochemistry
> DePauw University
> 602 S. College Ave.
> Greencastle, IN 46135
> [email protected]
> ***********************************************
>
>
> On May 7, 2009, at 12:48 PM, Robert Hanson wrote:
>
> Jeff, now if you are going to use that "Jmol2.js" then you need to add
>
> jmolSetXHTML()
>
> just before the applet call.
>
> Bob
>
>
> On Wed, May 6, 2009 at 11:17 PM, Jeff Hansen <[email protected]> wrote:
>
>> Bob,
>> You beat me to it and of course your solution is more sophisticated than
>> mine. For the record here is what I did.
>>
>> function _jmolDocumentWrite(text) {
>> if (_jmol.currentDocument)
>> var newcontent = document.createElement('div');
>> newcontent.appendChild(document.createTextNode(text));
>> var str = '';
>> for (var i = 0; i < text.length; i++)
>> str += String(text[i]);
>> document.body.innerHTML=str;
>> // _jmol.currentDocument.write(text);
>> return text;
>> }
>>
>>
>> You can see it in action here:
>>
>> http://webme.com/jhansen4/iWeb/Jmol/JmolPlusSVG.xhtml<http://web.me.com/jhansen4/iWeb/Jmol/JmolPlusSVG.xhtml>
>>
>> I'll grab a copy of your revised Jmol.js and begin using that.
>>
>>
>> Thanks!
>>
>>
>> Jeff
>>
>> ***********************************************
>> Jeff Hansen
>> Department of Chemistry and Biochemistry
>> DePauw University
>> 602 S. College Ave.
>> Greencastle, IN 46135
>> [email protected]
>> ***********************************************
>>
>>
>> On May 7, 2009, at 12:01 AM, Robert Hanson wrote:
>>
>> Well, you are quicker than I am. Try this:
>>
>> http://chemapps.stolaf.edu/jmol/docs/examples-11/t2.xhtml
>>
>> and
>>
>> http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol.js
>>
>>
>> On Wed, May 6, 2009 at 8:35 PM, Jeff Hansen <[email protected]> wrote:
>>
>>> Bob,
>>> The idea is to use a multiple model file in Jmol, pull out the energies
>>> of each model, and use that data to generate an svg graph. The svg should
>>> highlight the point corresponding to the model currently being displayed and
>>> likewise if the user clicks a point on the svg it will highlight the point
>>> and update the jmol to display the corresponding model. In other words, the
>>> svg will be a graph of the energies of the models and the svg and applet
>>> will "talk" to each other.
>>>
>>> Currently I am using jmolInitialize, jmolApplet, jmolEval, and
>>> jmolGetPropertyAsArray. Of course I would prefer to use jmol.js but if
>>> necessary can do without it.
>>>
>>>
>>> Jeff
>>>
>>> ***********************************************
>>> Jeff Hansen
>>> Department of Chemistry and Biochemistry
>>> DePauw University
>>> 602 S. College Ave.
>>> Greencastle, IN 46135
>>> [email protected]
>>> ***********************************************
>>>
>>>
>>> On May 6, 2009, at 7:52 PM, Robert Hanson wrote:
>>>
>>> Ah, that sounds familiar. Correct. There is no "document.write" in XHTML.
>>> Sorry. That pretty much rules it out.
>>>
>>> As I recall Egon at one point wrote a DOM-specific XHTML version of a
>>> page that worked with Jmol, though not Jmol.js.
>>>
>>> But you don't necessarily have to have Jmol.js to use Jmol. You just have
>>> to work harder to do it without.
>>>
>>> So what is the deal with "inline SVG"?
>>>
>>> Bob
>>>
>>>
>>> 2009/5/6 Angel Herráez <[email protected]>
>>>
>>>> It seems that the first hit is caused by document.write not being
>>>> supported
>>>> by XHTML (documented in several websites)
>>>>
>>>> My test:
>>>> XHTML 1.0 Transitional
>>>>
>>>> _jmol.currentDocument.write(text);
>>>> at line line 834 within
>>>> function _jmolDocumentWrite(text) {
>>>>
>>>> throws an error in Firefox 3
>>>> No error in Opera, but no applet
>>>>
>>>> Clue:
>>>> Does document.write work in XHTML?
>>>> No. Because of the way XML is defined, it is not possible to do tricks
>>>> like
>>>> this, where markup is generated by scripting while the parser is still
>>>> parsing
>>>> the markup.
>>>> You can still achieve the same effects, but you have to do it by using
>>>> the
>>>> DOM to add and delete elements.
>>>> (source: http://www.w3.org/MarkUp/2004/xhtml-faq#docwrite)
>>>>
>>>>
>>>> And quoting
>>>> http://jmol.sourceforge.net/docs/JmolAppletGuide.html#XHTMLSupport
>>>>
>>>> the standard Jmol.js Javascript library will not work under properly
>>>> compliant XML browsers. An alternative, largely similar, but entirely
>>>> unsupported library is available ... insert address here ...
>>>> (that JmolAppletGuide doc is old --Miguel's times? but true indeed)
>>>>
>>>>
>>>> I've tested the alternative to document.write given at
>>>> http://weston.ruter.net/projects/xhtml-document-write/
>>>> http://shepherd-interactive.googlecode.com/svn/trunk/xhtml-document-
>>>> write/xhtml-document-write.js<http://shepherd-interactive.googlecode.com/svn/trunk/xhtml-document-%0Awrite/xhtml-document-write.js>
>>>>
>>>> and, althogh it does not solve the problem, is on its way:
>>>>
>>>> Opera displays a functional applet, but below it is the yellow box that
>>>> says
>>>> "you don't have Java" (generated by Jmol.js)
>>>>
>>>> Firefox displays a Java box with an error, applet class not found, and
>>>> the
>>>> yellow box below it
>>>>
>>>> IE8 displays nothing --seems not to like xhtml at all --even with no
>>>> Jmol
>>>> code in the page, it just displays a blank page and does a download --of
>>>> the
>>>> page?.
>>>>
>>>>
>>>> More to come...
>>>>
>>>>
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your
>>>> production scanning environment may not be a perfect world - but thanks
>>>> to
>>>> Kodak, there's a perfect scanner to get the job done! With the NEW KODAK
>>>> i700
>>>> Series Scanner you'll get full speed at 300 dpi even with all image
>>>> processing features enabled. http://p.sf.net/sfu/kodak-com
>>>> _______________________________________________
>>>> Jmol-users mailing list
>>>> [email protected]
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>
>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Professor of Chemistry
>>> St. Olaf College
>>> 1520 St. Olaf Ave.
>>> Northfield, MN 55057
>>> http://www.stolaf.edu/people/hansonr
>>> phone: 507-786-3107
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>> ------------------------------------------------------------------------------
>>> The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your
>>> production scanning environment may not be a perfect world - but thanks
>>> to
>>> Kodak, there's a perfect scanner to get the job done! With the NEW KODAK
>>> i700
>>> Series Scanner you'll get full speed at 300 dpi even with all image
>>> processing features enabled.
>>> http://p.sf.net/sfu/kodak-com_______________________________________________
>>> Jmol-users mailing list
>>> [email protected]
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your
>>> production scanning environment may not be a perfect world - but thanks
>>> to
>>> Kodak, there's a perfect scanner to get the job done! With the NEW KODAK
>>> i700
>>> Series Scanner you'll get full speed at 300 dpi even with all image
>>> processing features enabled. http://p.sf.net/sfu/kodak-com
>>> _______________________________________________
>>> Jmol-users mailing list
>>> [email protected]
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>> ------------------------------------------------------------------------------
>> The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your
>> production scanning environment may not be a perfect world - but thanks to
>> Kodak, there's a perfect scanner to get the job done! With the NEW KODAK
>> i700
>> Series Scanner you'll get full speed at 300 dpi even with all image
>> processing features enabled.
>> http://p.sf.net/sfu/kodak-com_______________________________________________
>> Jmol-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>>
>>
>> ------------------------------------------------------------------------------
>> The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your
>> production scanning environment may not be a perfect world - but thanks to
>> Kodak, there's a perfect scanner to get the job done! With the NEW KODAK
>> i700
>> Series Scanner you'll get full speed at 300 dpi even with all image
>> processing features enabled. http://p.sf.net/sfu/kodak-com
>> _______________________________________________
>> Jmol-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> ------------------------------------------------------------------------------
> The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your
> production scanning environment may not be a perfect world - but thanks to
> Kodak, there's a perfect scanner to get the job done! With the NEW KODAK
> i700
> Series Scanner you'll get full speed at 300 dpi even with all image
> processing features enabled.
> http://p.sf.net/sfu/kodak-com_______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
>
> ------------------------------------------------------------------------------
> The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your
> production scanning environment may not be a perfect world - but thanks to
> Kodak, there's a perfect scanner to get the job done! With the NEW KODAK
> i700
> Series Scanner you'll get full speed at 300 dpi even with all image
> processing features enabled. http://p.sf.net/sfu/kodak-com
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your
production scanning environment may not be a perfect world - but thanks to
Kodak, there's a perfect scanner to get the job done! With the NEW KODAK i700
Series Scanner you'll get full speed at 300 dpi even with all image
processing features enabled. http://p.sf.net/sfu/kodak-com
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
