Andreas, It looks to me like some kind of timing issue. I've made a page with some jQuery stuff on it. It works. I add a Jmol applet. Everything still works. I then put a function that grabs data from the Jmol applet inside the (document).ready wrapper and put a call to that function after the load command and that doesn't work. Even if the function I call after the load command is just a simple alert it doesn't work. As soon as I move that function outside of the (document).ready wrapper it works but then any jQuery function calls don't.
Jeff *********************************************** Jeff Hansen Department of Chemistry and Biochemistry DePauw University 602 S. College Ave. Greencastle, IN 46135 [email protected] *********************************************** On May 27, 2009, at 3:11 PM, Andreas Prlic wrote: > And there is no errors on the javascript console? > A > > > On Wed, May 27, 2009 at 12:06 PM, Jeff Hansen <[email protected]> > wrote: >> Well. I would replace some of this with jQuery if it were >> working. Had >> planned to do that. I've kind of been doing what you suggest. I >> did a page >> with just jQuery stuff. I've done just Jmol. I've done just svg. >> I've had >> this working with Jmol, svg, and just javascript without the >> jQuery. It is >> only when I start putting in jQuery that I begin to get a problem. >> I'll try >> to go back and start a little simpler and see what happens. >> >> >> *********************************************** >> Jeff Hansen >> Department of Chemistry and Biochemistry >> DePauw University >> 602 S. College Ave. >> Greencastle, IN 46135 >> [email protected] >> *********************************************** >> >> >> On May 27, 2009, at 3:00 PM, Andreas Prlic wrote: >> >>> Hi Jeff, >>> >>> so there are several things about your code: >>> >>> * some stuff does not look like jquery: e.g. >>> >>> >>> parseFloat >>> (document.getElementById('graph').getAttributeNS(null,"width"));// >>> find >>> the width of the svg graph >>> >>> I suggest to replace these bits of legacy javascript with jquery >>> code. >>> >>> * My general recommendation: Use firefox and the web developer >>> plugin. >>> Then you will get an icon which will show you any javascript >>> errors on >>> your page. Open the javascript console and look for any error >>> messages. >>> >>> Then: to avoid the overall complexity: start simple. Build up your >>> page step by step. Start with making sure jquery is installed >>> correctly. do an independent test page to make sure the svn parts of >>> your page work fine. Only then merge the two things together. >>> Finally >>> add Jmol... >>> >>> Does that make help? >>> A >>> >>> >>> >>> >>> On Wed, May 27, 2009 at 10:08 AM, Jeff Hansen <[email protected]> >>> wrote: >>>> >>>> Andreas, >>>> >>>> Thanks for offering to take a look. I've attached both the xhtml >>>> page >>>> and >>>> the js file. If you can find anything I'm doing wrong I would >>>> really >>>> appreciate it. You'll notice that all my javascript code is >>>> outside of >>>> the >>>> $(document).ready(function(){ ... }) jQuery wrapper. This is >>>> because >>>> whenever I put anything in there it doesn't work. Anything else >>>> that >>>> calls >>>> a jQuery function (like $("#circle0").toggleClass("selected"); ) >>>> also >>>> doesn't do anything. >>>> >>>> >>>> Jeff >>>> >>>> >>>> >>>> *********************************************** >>>> Jeff Hansen >>>> Department of Chemistry and Biochemistry >>>> DePauw University >>>> 602 S. College Ave. >>>> Greencastle, IN 46135 >>>> [email protected] >>>> *********************************************** >>>> >>>> >>>> On May 27, 2009, at 12:04 PM, Andreas Prlic wrote: >>>> >>>>> Hi Jeff, >>>>> >>>>> Now sure what's exactly the problem from your description, >>>>> perhaps you >>>>> can send some example code? >>>>> >>>>> We are using a mix between JQuery and self written javacript on >>>>> the >>>>> new RCSB-PDB web site: >>>>> >>>>> e.g. this page tracks the Jmol console output to a div and shows >>>>> the >>>>> command history: >>>>> http://www.rcsb.org/pdb/explore/jmol.do?structureId=1CDG >>>>> >>>>> This page maps sequence domains on the structure: >>>>> >>>>> >>>>> http://www.rcsb.org/pdb/explore/remediatedSequence.do?structureId=1CDG¶ms.showJmol=true >>>>> >>>>> Andreas >>>>> >>>>> >>>>> >>>>> On Wed, May 27, 2009 at 8:11 AM, Jeff Hansen >>>>> <[email protected]> wrote: >>>>>> >>>>>> Does anyone have any experience using jQuery on a page with >>>>>> Jmol? I >>>>>> wanted to do this as it would greatly simplify some things I >>>>>> wanted to >>>>>> do. Unfortunately, none of the jQuery seems to be working. >>>>>> Let me >>>>>> explain. I can load a Jmol applet and structure and write >>>>>> javascript >>>>>> to manipulate it in different ways but any calls to jQuery >>>>>> functions >>>>>> simply do not execute. When I played around with jQuery on a >>>>>> simple >>>>>> test page (without Jmol) it was fine. If anyone can help with >>>>>> this I >>>>>> would really appreciate it. My alternative is to return to some >>>>>> kludgy code and I'd rather not. >>>>>> >>>>>> *********************************************** >>>>>> Jeff Hansen >>>>>> Department of Chemistry and Biochemistry >>>>>> DePauw University >>>>>> 602 S. College Ave. >>>>>> Greencastle, IN 46135 >>>>>> [email protected] >>>>>> *********************************************** >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> ------------------------------------------------------------------------------ >>>>>> Register Now for Creativity and Technology (CaT), June 3rd, >>>>>> NYC. CaT >>>>>> is a gathering of tech-side developers & brand creativity >>>>>> professionals. >>>>>> Meet >>>>>> the minds behind Google Creative Lab, Visual Complexity, >>>>>> Processing, & >>>>>> iPhoneDevCamp as they present alongside digital heavyweights like >>>>>> Barbarian >>>>>> Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com >>>>>> _______________________________________________ >>>>>> Jmol-users mailing list >>>>>> [email protected] >>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>>>> >>>>> >>>>> >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> Register Now for Creativity and Technology (CaT), June 3rd, NYC. >>>>> CaT >>>>> is a gathering of tech-side developers & brand creativity >>>>> professionals. >>>>> Meet >>>>> the minds behind Google Creative Lab, Visual Complexity, >>>>> Processing, & >>>>> iPhoneDevCamp as they present alongside digital heavyweights like >>>>> Barbarian >>>>> Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat- >>>>> com >>>>> _______________________________________________ >>>>> Jmol-users mailing list >>>>> [email protected] >>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>>> >>>> >>>> >> >> ------------------------------------------------------------------------------ Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT is a gathering of tech-side developers & brand creativity professionals. Meet the minds behind Google Creative Lab, Visual Complexity, Processing, & iPhoneDevCamp as they present alongside digital heavyweights like Barbarian Group, R/GA, & Big Spaceship. http://p.sf.net/sfu/creativitycat-com _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
