Hi Robert, my goal is to play/visualize an animation of a reaction in Jmol including the Hyper-Chem calculated isosurfaces of each frame. The problem is that the isosurfaces calculated for each frame is not displayed because the reaction animation is faster than the speed of the isosurface calculation of the .mol2 file, ig. the reaction animation works well, but the isosurface visualization is too slow, even the fps=1.
I think there are 2 ways: one is java-script based - somthing like a callback function, or using the jvxl-format for precalculation - which is better, I think. But I don't know the way of transforming multistructure containing mol2 => jvxl The webpage draft (source code) can be found at: http://www.cup.uni-muenchen.de/dept/ch/engel/test/rx_final3/eins.htm Please first click checkbox "Transparente Oberfläche" = translucent isosurface and click on stepwise forward button (vorwärts). This feature works fine. But when clicking the "Play" button, including isosurface visualisation, the surface calculation is too slow and cannot follow the animation frames - even the fps were reduced to 1. Maybe you know a trick or workaround to visualize the animation surfaces? Thanks very much and best regards, Thomas Robert Hanson schrieb: > These are surfaces of some kind? > > On Wed, Aug 26, 2009 at 5:35 PM, Thomas Engel <[email protected] > <mailto:[email protected]>> wrote: > > Hello, > how can I easily generate a multiple isosurface jvxl-file from a mol2 > data file format, containing up to 100 structures/frames of a > reaction? > > Thanks, > Thomas > > > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports > 2008 30-Day > trial. Simplify your report design, integration and deployment - > and focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > Jmol-users mailing list > [email protected] > <mailto:[email protected]> > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day > trial. Simplify your report design, integration and deployment - and focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > ------------------------------------------------------------------------ > > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
