Eric -- a thought comes to mind. Have you tried "load trajectory"? It saves hugely on memory and should make animations run faster as well. In your case then there are only 1996 atoms. Quite a savings.
You have to use the latest build, at http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip because there is a bug in 11.9.4 and 11.8.5 that broke trajectories. Bob On Sun, Sep 20, 2009 at 11:09 AM, Eric Martz <[email protected]> wrote: > I found a two-command sequence that freezes Jmol application. I > report it in case it would be desirable to handle this error in a > more graceful manner. > > Tests were with Jmol application 11.9.4, under OS 10.5.8 (current > Leopard), with java 1.5.0_20 (current Apple). > > While typing commands, I inadvertantly gave a pdb filename in a > script command. After some experimentation, I found that this 2 > command sequence reproducibly freezes Jmol (cannot rotate model with > mouse, cannot type commands, cannot raise menu, cannot quit; forced quit). > > $ script hivdrug.pdb # note .pdb, not .spt > $ exit > > > ------------------------------------------------------------------------------ > Come build with us! The BlackBerry® Developer Conference in SF, CA > is the only developer event you need to attend this year. Jumpstart your > developing skills, take BlackBerry mobile applications to market and stay > ahead of the curve. Join us from November 9-12, 2009. Register now! > http://p.sf.net/sfu/devconf > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------------ Come build with us! The BlackBerry® Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9-12, 2009. Register now! http://p.sf.net/sfu/devconf _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
