I figured out the basics of installing Jmol.js on
my own site:

  http://neurocommons.org/~danc/viz/pg1.html

I can open the console and execute this:

  load "http://www.rcsb.org/pdb/files/1K5N.pdb";;

It works as expected.

Then I put an input field with the value 1K5N
and a button that calls a javascript function that
turns that pdbid into a full URI and tries to
run the very same script using...

  jmolScriptWait('load "' + adr + '";');

It doesn't work; instead, I get:

4,scriptStatus,0,Script completed
6,scriptStatus,0,Jmol script terminated
3,scriptTerminated,1,Jmol script terminated unsuccessfully: script
ERROR: java.security.AccessControlException: access denied
(java.net.SocketPermission www.rcsb.org:80 connect,resolve) | ----line 1
command 1: |          load >> ''http://www.rcsb.org/pdb/files/1K5N.pdb''
<<
5,scriptTerminated,1,Jmol script terminated successfully
1,scriptStarted,4,load ''http://www.rcsb.org/pdb/files/1K5N.pdb'';
2,scriptError,0,script ERROR: java.security.AccessControlException:
access denied (java.net.SocketPermission www.rcsb.org:80
connect,resolve) | ----line 1 command 1: |          load >>
''http://www.rcsb.org/pdb/files/1K5N.pdb'' <<

Then I added a jmolCommandInput() to the page; putting
  load "http://www.rcsb.org/pdb/files/1K5N.pdb";;
in there works fine.

I'm stumped. Help?!?!

-- 
Dan Connolly, W3C http://www.w3.org/People/Connolly/
consultant, Midwest Web Sense http://www.midwestwebsense.com/
gpg D3C2 887B 0F92 6005 C541  0875 0F91 96DE 6E52 C29E


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