Figured it out thanks, hkl should be in quotation marks e.g. select within(3.0, "hkl", {0 0 1}) steve
>>> "Stephen Hillier" <s.hill...@macaulay.ac.uk> 01-Jan-10 10:05 PM >>> I also have question about selecting after loading a range of unit cells from a CIF file I'm trying to figure out how to use 'select within..' to select some atoms near a plane e.g: but I get an error message and can't figure out what I'm doing wrong: $ load "" {3 3 1} packed $ select within(3.0, hkl, {0 0 1}) script compiler ERROR: invalid expression token: hkl ---- select within(3.0, <<<< $ Jmol is version 11.8.15, Happy New Year, and thanks for any help, steve >>> Robert Hanson <hans...@stolaf.edu> 01-Jan-10 7:32 PM >>> select atomno >= xxx and atomno <= yyyy On Wed, Dec 30, 2009 at 2:42 AM, Aya <a...@iit.edu> wrote: Hello, I need to select a range of atoms using their atomno. When I use, for example, select(*)[first atom no.][last atom no.], it seems to be shifting the selection by some 14 atoms. When I hover over the atoms, they have the same atomno as the pdb, and is still out of the specified range. Yes, both first and last atoms are listed although not every atom within the range is listed. If this is causing the problem, is there another way to select a range by atom number - not residue. Thank you, Aya ------------------------------------------------------------------------------ This SF.Net email is sponsored by the Verizon Developer Community Take advantage of Verizon's best-in-class app development support A streamlined, 14 day to market process makes app distribution fast and easy Join now and get one step closer to millions of Verizon customers http://p.sf.net/sfu/verizon-dev2dev _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Please note that the views expressed in this e-mail are those of the sender and do not necessarily represent the views of the Macaulay Institute. This email and any attachments are confidential and are intended solely for the use of the recipient(s) to whom they are addressed. If you are not the intended recipient, you should not read, copy, disclose or rely on any information contained in this e-mail, and we would ask you to contact the sender immediately and delete the email from your system. Thank you. The Macaulay Land Use Research Institute is a company limited by guarantee, registered in Scotland under company number 16190 and a registered Scottish charity, number SC011922. Registered office Macaulay Drive, Craigiebuckler, Aberdeen, AB15 8QH. -- Please note that the views expressed in this e-mail are those of the sender and do not necessarily represent the views of the Macaulay Institute. This email and any attachments are confidential and are intended solely for the use of the recipient(s) to whom they are addressed. If you are not the intended recipient, you should not read, copy, disclose or rely on any information contained in this e-mail, and we would ask you to contact the sender immediately and delete the email from your system. Thank you. The Macaulay Land Use Research Institute is a company limited by guarantee, registered in Scotland under company number 16190 and a registered Scottish charity, number SC011922. Registered office Macaulay Drive, Craigiebuckler, Aberdeen, AB15 8QH.
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