On Tue, 16 Feb 2010 12:04:32 -0800, Thomas Stout <thomasjst...@gmail.com>
wrote:
> To follow up on my question from last week concerning
"auto-orientation",
> Rolf Huehne very graciously pointed me in the direction of a solution
that
> he had already crafted for JenaLib.  He uses the dimensions of the
bounding
> box, selected for the atoms of interest, and arrays the longest two
vectors
> in the plane perpendicular to the viewing axis.  This has the effect of
> making the majority of the molecule visible to the viewer.
> 

Tom,

How do you select "the atoms of interest" absent any user input?

Rich

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