Kersten,
The COMPARE command is illustrated at
http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm?topic=103
I've used your Kt38/Kt7 comparison as an example. Hope you like it! The
example illustrates both atom-based coordinate-coordinate least-squares
optimization (as in PyMol) and quaternion-based orientation-orientation
least-squares optimization (my innovation).
Thank you so much for getting me going on this. I've learned way more than I
expected to learn, and the fact that doing this all with quaterions only
requires about 50 lines of added Java code to Jmol still just knocks me out.
Bob
<http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm?topic=104>
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