> 1.    select an atom in a pdb file and make it the center of rotation

see Scrpting Documentation, commands "select" and "center"


> 2.    restrict rendering to only those atoms or structure at a given  
> radius away from the selected atom (center of rotation)

select within
   and then
display selected
   or
hide not selected
   or, directly in one go
display within

> 3.    increase/decrease the radius to increase or decrease the number of  
> atoms rendered.

repeat the commands



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