Absolutely!
Or just have one applet send the information to the other. All it is is a
quaternion (4 numbers) and a translation vector (3 numbers).
You could write that today in about 5 minutes, I think.
Pretty easy, because with SYNC you have direct applet-applet communication
without JavaScript.
Bob
On Sun, Mar 28, 2010 at 7:11 AM, Paul Pillot <
[email protected]> wrote:
> Congratulations Bob, this is really awesome !
> I was wondering if it would be possible to make such a structural alignment
> between two different applets included in the same webpage ?
> Once both molecules are aligned, the applets could be synchronized thus
> allowing a comparison between both structures.
> Thanks,
> Paul
> Le 28 mars 2010 à 04:46, Robert Hanson a écrit :
>
> Jmol users,
>
>
> http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm
>
> OK, we are going to have fun with this! Jmol now has atom-pair comparisons
> built into the scripting in the form of a COMPARE command and also a nifty
> ROTATE option:
>
>
> ROTATE COMPARE {atoms1} {atoms2} -nSeconds
>
> does a smooth motion animation over nSeconds time moving atoms1 to the
> absolute best fit at the positions of atoms2 in a straight line motion. It's
> really a combination of a rotation and a translation -- which, by the way,
> constitutes a helical or screw motion. (The negative sign is necessary
> because for the rotate command, a positive number is degrees per second.) So
> there is also a HELIX option that lets you visualize that screw motion. (I'm
> betting Dean Johnston is getting ideas already....)
>
> ROTATE HELIX COMPARE {atoms1} {atoms2} -nSeconds
>
> Note that you need at least 3 atoms to do this. Otherwise the pathway is
> undefined. Watch those crystallographic molecules zoom around their screw
> axes:
>
> ROTATE HELIX COMPARE {symop=1} {symop=4} -3
>
> right? (no, we can't invert through a plane or center of inversion yet...)
>
> Also, you can compare two sets, but then move another based on that
> comparison:
>
> ROTATE COMPARE {2.1 and *.CA} {1.1 and *.CA} {2.1} -3
>
> This moves the whole model 2.1 based on a comparison of just the alpha
> carbons -- what PyMol and other programs typically do, without the fun of
> animation.
>
> Also, in this release will be the organic chemist's stereochemical
> inversion, which is technically a 180-degree rotation. A nice example of
> that is up there as well as feature #110. It looks like this:
>
> select {*}
> invertSelected STEREO {atomno=12} {atomno=11 or atomno=13}
>
> This will invert the groups around atomno=12 that are NOT atoms 11 or 13.
> Hmm. Come to think of it, I should probably change that to the center and
> the atoms you DO want inverted, right? OK.... This one's not quite ready, I
> think.
>
>
> Bob
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> ------------------------------------------------------------------------------
> Download Intel® Parallel Studio Eval
> Try the new software tools for yourself. Speed compiling, find bugs
> proactively, and fine-tune applications for parallel performance.
> See why Intel Parallel Studio got high marks during beta.
>
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>
>
>
>
> ------------------------------------------------------------------------------
> Download Intel® Parallel Studio Eval
> Try the new software tools for yourself. Speed compiling, find bugs
> proactively, and fine-tune applications for parallel performance.
> See why Intel Parallel Studio got high marks during beta.
> http://p.sf.net/sfu/intel-sw-dev
> _______________________________________________
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>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Download Intel® Parallel Studio Eval
Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
See why Intel Parallel Studio got high marks during beta.
http://p.sf.net/sfu/intel-sw-dev
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