Otis, This is a very neat application. I hope it can be tweaked to remedy a few glitches. When I draw trans-dimethylcyclohexane and load the molecule the chair conformer of the cis-isomer is displayed. Drawing the cis-isomer loads the same Jmol display. If I use the X button of the editor to force hydrogens in the right configuration a nonsense structure is loaded. I am running Mac OS 10.4
Bill Otis Rothenberger wrote: > Hello- > > With the inclusion of UFF minimization in Jmol, I decided to revisit > an old project that I started in the early days of Chime - the design > of a virtual molecular model kit that had the feel of an old Prentice > Hall student model kit. During this recent Jmol stage of the project, > Bob Hanson made it clear to me that a Jmol molecular editor was going > to be required as part of the model kit. He also provided project > encouragement and considerable scripting and programming assistance. > > My colleague, Tom Newton, and I are now at the point where we have a > Jmol Virtual Model Kit up and running, but we would value some > suggestions on additional tools inherent in Jmol that would enhance > the pedagogic value of the kit. We are also interested in suggestions > to increase what I'll call the tactility of the kit. For any > users-list members with an interest in pointing us in the right > direction on this project, the url is: > > http://chemagic.com/web_molecules/ > > There is a users manual, but it's really in its early stages. I also > linked the page to a video that gives a 3+ minute synopsis feel for > how the application works. > > Any suggestions would be appreciated. > > Otis > > > -- > Otis Rothenberger > http://chemagic.org > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > ------------------------------------------------------------------------ > > _______________________________________________ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
