Verified on MacOS, Firefox 3.6.3 Java 1.5.0_22, you are using  
Jmol12.0.RC6 (is that right).

That is weird looking.  I can also get it to happen when rotating by  
hand.  It looks as if the frame is changing, but it doesn't appear to  
be.

It does not appear to happen when the mo is created using the  
isosurface command:

isosurface modelmo mo 1

Jonathan
On Apr 21, 2010, at 1:50 PM, jmol-users-requ...@lists.sourceforge.net  
wrote:

> Message: 1
> Date: Tue, 20 Apr 2010 12:35:35 -0400
> From: Otis Rothenberger <osrot...@chemagic.com>
> Subject: [Jmol-users] MO display problem
> To: Jmol Users <jmol-users@lists.sourceforge.net>
> Cc: Tom Newton <new...@usm.maine.edu>
> Message-ID: <4bcdd7d7.2010...@chemagic.com>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
> In Jmol 12.0.RC6_dev, I'm seeing peculiar behavior of MO's. Once
> displayed, the MO's disappear and reappear at various positions during
> mouse rotation or the spin command.
>
> The script
>
> load ../meps/alkene!1-butene_mo.mol;mo 1;spin
>
> in the script text field (followed by clicking Run) on the following
> page will illustrate the problem:
>
> http://chemagic.com/web_molecules/script_page_large.aspx
>
> Has anyone else seen this problem? I don't think it is related to  
> other
> code on the page.
>
> Otis
>
> -- 
> Otis Rothenberger

                          Dr. Jonathan H. Gutow
Chemistry Department                                 gu...@uwosh.edu
UW-Oshkosh                                           Office:920-424-1326
800 Algoma Boulevard                                 FAX:920-424-2042
Oshkosh, WI 54901
                  http://www.uwosh.edu/facstaff/gutow






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