I have the same problem as phil.  It seems to be browser independent.  Here's 
the error messages.

Exception in thread "AWT-EventQueue-2" java.lang.NullPointerException
        at org.jmol.viewer.Viewer.getSelectionHaloEnabled(Unknown Source)
        at org.jmol.viewer.Viewer.getBooleanProperty(Unknown Source)
        at org.jmol.popup.JmolPopup.show(Unknown Source)
        at org.jmol.viewer.Viewer.popupMenu(Unknown Source)
        at org.jmol.viewer.ActionManager.mousePressed(Unknown Source)
        at org.jmol.viewer.MouseManager14.mousePressed(Unknown Source)
        at org.jmol.viewer.MouseManager14.mousePressed(Unknown Source)
        at java.awt.Component.processMouseEvent(Component.java:6345)
        at java.awt.Component.processEvent(Component.java:6113)
        at java.awt.Container.processEvent(Container.java:2085)
        at java.awt.Component.dispatchEventImpl(Component.java:4714)
        at java.awt.Container.dispatchEventImpl(Container.java:2143)
        at java.awt.Component.dispatchEvent(Component.java:4544)
        at java.awt.EventQueue.dispatchEvent(EventQueue.java:635)
        at 
java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
        at 
java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
        at 
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
        at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

Clearing out all the caches and restarting browsers doesn't help.  Nor does 
choosing to run the applet as its own process.

Jonathan


On May 20, 2010, at 7:33 PM, [email protected] wrote:

> so you don't even see a structure?
> 
> On Thu, May 20, 2010 at 7:07 PM, Philip Bays <[email protected]> wrote:
> 
>> Bob:
>> 
>> I click on the red text in the description which transfers the command to
>> the command area under the applet.  Clicking on cmd results in nothing.
>> (Mac 10.6.3, java 1.6 something.)
>> 
>> Phil

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