Jeff, Pedagogically I can see a use to be able to select a particular atom type (say all the alpha C's in a peptide) or residue and change their color to highlight them. I had not thought about wanting to do a particular sequence. Is that something that would be nice to have available in a simple interface or is it advanced enough to let people script that?
The idea of this is to provide the user of the web page with an interface for changing colors to help them find particular things. Jonathan On Jun 11, 2010, at 10:40 AM, [email protected] wrote: > Message: 3 > Date: Fri, 11 Jun 2010 11:10:57 -0400 > From: Jeff Hansen <[email protected]> > Subject: Re: [Jmol-users] Coloring A molecular dynamically.... > To: [email protected] > Message-ID: <[email protected]> > Content-Type: text/plain; charset="us-ascii" > > Jonathan, > > I'm not sure I understand the goal here. Is it to select a single > atom or residue and color it? Is it to select all lysines and color > them red? Is it to select residues 50-73 and color them blue? Is > it to find all alpha helices and color them purple? Dr. Jonathan H. Gutow Chemistry Department [email protected] UW-Oshkosh Office:920-424-1326 800 Algoma Boulevard FAX:920-424-2042 Oshkosh, WI 54901 http://www.uwosh.edu/facstaff/gutow ------------------------------------------------------------------------------ ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
