Then N atom is a required atom for a protein. It's an unusual model. So in
this case you would want to say something like:
select NOT NUCLEIC....
instead of
select PROTEIN....
Bob
On Thu, Jul 1, 2010 at 3:24 PM, Charles Shubert <[email protected]> wrote:
> #Bug: spacefill for residue with missing N not working
> #Jmol 12.0.RC22 2010-06-24 21:45
>
> load "2KTQ.pdb"
> subset; select PROTEIN; spacefill 0 %; color bonds TRANSLUCENT 1.0;
> subset; select WATER; spacefill 0 %;
>
> #Notice the hanging residue below the DNA.
> #This is [GLU]634:A
>
> #In the 2KTQ.pdb file REMARK 470 MISSING ATOM has the following:
>
> REMARK 470 MISSING ATOM
>
> REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER;
>
> REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
>
> REMARK 470 I=INSERTION CODE):
>
> REMARK 470 M RES CSSEQI ATOMS
> …
> REMARK 470 GLU A 634 N CG CD OE1 OE2
>
> …
>
> Thanks,
>
> --Chuck
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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