Dear Bob, Thanks for fixing the bugs I reported in the past couple of days! And thanks for adding "set hbondsrasmol true|false". I confirm that in new8.htm the examples #15 and #53 now seem to work as expected.
Re "color hbonds energy": It is not obvious to me whether blue is high (weak) or low (strong) energy. Please state this under #colorbondobject. Is there a way to report the hbond energy values for pairs of hbonded atoms? Could it be reported by hover? Or could it be reported as a number attached to the bond, similarly to distance monitors? I'm not necessarily asking for these features, just curious how one could find out the energy values. I am unclear which of the three "calculate hbonds" methods uses DSSP. Could you please clarify that in the documentation at #calculate? Does DSSP use hbondsAngleMinimum? I think not because I think that the RasMol-hbonds calculation uses DSSP and the Jmol-hbonds calculation does not. I cannot understand what the RasMol-hbonds TYPE colors represent in "color hbonds TYPE". Under calculate in the documentation, there is a link from "color hbonds TYPE" to #colorbondobject but there is no mention of TYPE under hbonds there. Or of the energy color scheme. Thanks, -Eric ------------------------------------------------------------------------------ This SF.net email is sponsored by Sprint What will you do first with EVO, the first 4G phone? Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
