That site is back up. I've also uploaded the documentation to sourceForge.
(which I was having trouble doing before)

On Thu, Aug 19, 2010 at 10:53 PM, Robert Hanson <hans...@stolaf.edu> wrote:

> Thank you, Paul, for contacting us about this error. Looks like we had a
> bug that only appears for first-time users. Very sorry about that -- not
> nice at all to do that to new users, I know! This is now fixed for Jmol
> 12.0.8 and 12.1.6, which are both ready for release.
>
> Right this minute, though, http://chemapps.stolaf.edu is down, so I can't
> do any updating there like I usually do.
>
>
>
>
>
>
>
>
> On Thu, Aug 12, 2010 at 8:48 PM, Paul A Craig <pac8...@rit.edu> wrote:
>
>> Dear jmol-user-owner,
>>
>> I joined the jmol site as a user this morning and found that I have an
>> error when I try to open Jmol 12.0 on my Mac or my Linux laptop.
>> Please let me know if I am allowed to post to this list.  I may have
>> signed up as paul.cr...@rit.edu, but my email may arrive as having been
>> sent by pac8...@rit.edu.
>>
>> Thanks.
>>
>> Paul
>>
>> Paul A. Craig
>> Professor of Biochemistry and Bioinformatics
>> Rochester Institute of Technology
>> Rochester, NY 14623
>> USA
>> Telephone: (585)-475-6145
>> email: paul.cr...@rit.edu
>>
>> CONFIDENTIALITY NOTE: The information transmitted, including attachments,
>> is intended only for the person(s) or entity to which it is addressed and
>> may contain confidential and/or privileged material. Any review,
>> retransmission, dissemination or other use of, or taking of any action in
>> reliance upon this information by persons or entities other than the
>> intended recipient is prohibited. If you received this in error, please
>> contact the sender and destroy any copies of this information.
>>
>>
>> ________________________________________
>> From: jmol-users-ow...@lists.sourceforge.net [
>> jmol-users-ow...@lists.sourceforge.net]
>> Sent: Thursday, August 12, 2010 7:01 PM
>> To: Paul A Craig
>> Subject: Problem running Jmol 12.0 application in Linux
>>
>> You are not allowed to post to this mailing list, and your message has
>> been automatically rejected.  If you think that your messages are
>> being rejected in error, contact the mailing list owner at
>> jmol-users-ow...@lists.sourceforge.net.
>>
>>
>>
>> ---------- Forwarded message ----------
>> From: Paul A Craig <pac8...@rit.edu>
>> To: "jmol-us...@lists.sf.net" <jmol-us...@lists.sf.net>
>> Date: Thu, 12 Aug 2010 17:24:42 -0400
>> Subject: Problem running Jmol 12.0 application in Linux
>>
>> I am trying to run Jmol (the application) on my Linux laptop. I am quite
>> new to Linux and am not sure what these statements mean.
>>
>> When I enter the command ./jmol.sh, I get this response:
>>
>> p...@paul_craig-netbook:~$ ./jmol.sh
>>
>> splash_image=jar:file:/home/paul/Jmol.jar!/org/openscience/jmol/app/images/Jmol_splash.jpg
>> history file is /home/paul/.jmol/history
>> 1694 script command tokens
>> (C) 2009 Jmol Development
>> Jmol Version: 12.0.6  2010-07-21 21:46
>> java.vendor: Sun Microsystems Inc.
>> java.version: 1.6.0_18
>> os.name: Linux
>> memory: 5.6/15.8
>> processors available: 2
>> useCommandThread: false
>> JmolConsole is initializing
>> User macros dir: /home/paul/.jmol/macros
>>      exists: true
>>  isDirectory: true
>> uncaught exception: java.lang.NullPointerException
>> java.lang.NullPointerException
>>       at java.awt.Component.setLocation(Component.java:1904)
>>       at org.openscience.jmol.app.jmolpanel.JmolPanel.<init>(Unknown
>> Source)
>>       at org.openscience.jmol.app.Jmol.<init>(Unknown Source)
>>       at org.openscience.jmol.app.jmolpanel.JmolPanel.getJmol(Unknown
>> Source)
>>       at org.openscience.jmol.app.jmolpanel.JmolPanel.startJmol(Unknown
>> Source)
>>       at org.openscience.jmol.app.Jmol.main(Unknown Source)
>> Exception in thread "main" java.lang.NullPointerException
>>       at org.openscience.jmol.app.jmolpanel.JmolPanel.startJmol(Unknown
>> Source)
>>       at org.openscience.jmol.app.Jmol.main(Unknown Source)
>>
>>
>> Any suggestions? I suspect I'm missing something obvious.
>>
>>
>> Paul A. Craig
>> Professor of Biochemistry and Bioinformatics
>> Rochester Institute of Technology
>> Rochester, NY 14623
>> USA
>> Telephone: (585)-475-6145
>> email: paul.cr...@rit.edu
>>
>> CONFIDENTIALITY NOTE: The information transmitted, including attachments,
>> is intended only for the person(s) or entity to which it is addressed and
>> may contain confidential and/or privileged material. Any review,
>> retransmission, dissemination or other use of, or taking of any action in
>> reliance upon this information by persons or entities other than the
>> intended recipient is prohibited. If you received this in error, please
>> contact the sender and destroy any copies of this information.
>>
>>
>>
>>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>



-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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