Alexander,
I guess you showed me the PyMOL command -- show surface.
http://www.pymolwiki.org/index.php/Surface says that's the Connolly surface.
I don't believe it, though. It's too rounded. It must be a molecular surface
with troughs. Actually, I think the troughs are a bit better than Jmol's.
Jmol's are a bit deep.
Bob
On Wed, Nov 24, 2010 at 9:17 AM, Alexander Rose <[email protected]
> wrote:
> Hi Bob,
>
> I tried it and think you're right about PyMOL centering on {0 0 0}.
>
> Here is what I did:
>
> PyMOL> load 3dqb.pdb
> PyMOL> show surface
> PyMOL> save 3dqb_sas.obj>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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