Just my 2 cents:

> Evidently, a fair number of PubChem's sdf's have partial charge data. 

I see aproblem here. The format shown in your example is not 
according to SDF spec (I think it does not suppor partial charge, 
only formal charge). They shouldbe using a different format, like 
MOL2.

So if Jmol is made to support reading that, it is not really SDF 
import. That should be made clear.

What other software reads those PubChem SDF files?



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