Oh, also, there is:
select within(basepair,"GC")
2011/3/5 Angel Herráez <[email protected]>
> Hi all
>
> I am tryng to write a script that will detect paired bases (A-U, G-C) in a
> RNA molecule.
> Before I start trying, any ideas about how to address it would be welcome.
>
> For now, I am thinking of using WITHIN with distance.
> (I am assuming that in large pdb files maybe the hbonds detection is not
> reliable, so I would
> not depend on that)
>
> Thanks for any ideas
> Angel
>
>
>
>
>
>
> ------------------------------------------------------------------------------
> What You Don't Know About Data Connectivity CAN Hurt You
> This paper provides an overview of data connectivity, details
> its effect on application quality, and explores various alternative
> solutions. http://p.sf.net/sfu/progress-d2d
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
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Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
What You Don't Know About Data Connectivity CAN Hurt You
This paper provides an overview of data connectivity, details
its effect on application quality, and explores various alternative
solutions. http://p.sf.net/sfu/progress-d2d
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