Hello Yingjie 

> Below is an example of usage I found on 
> http://jmol.sourceforge.net/jslibrary/#jmolEvaluate
>         alert( jmolEvaluate("a") );
>         // Displays the value of the 'a' variable if set in Jmol script.
> 
> I think the example might be a bit confusing for newbies like me :)

Why do you think so? It says clearly that "a" must be a Jmol variable.
I don't see where your "myvariable" comes from. Javascript? 


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