I reinstalled the java environment in Ubuntu and everything works fine.
this link contain some guide to install Sun java :
https://help.ubuntu.com/community/Java
openJDK will cause the application crash. don't know why.
and the iceTea plug-in should be removed.
From: Jonathan Gutow
Sent: Sunday, June 19, 2011 3:37 PM
To: [email protected]
Subject: Re: [Jmol-users] File reader not found :Pdb
Unfortunately, you are probably running up against the default JVM
installation on Ubuntu. They recently decided that the completely "free"
IceTea stuff was now up-to-snuff. If you take your test Ubuntu system and
install the Sun Java it should work. I do my development on Ubuntu and
everything works fine with the Sun Java. I think the people at Ubuntu jumped
the gun slightly. IceTea is almost complete, but not quite.
Browsers crashing is odd behavior. I just saw some features of Jmol not load
properly or behave strangely when using the non-Sun Java. Which browsers are
you testing on Ubuntu? I find Chromium and FF work fine.
Jonathan
On Jun 19, 2011, at 10:15 AM, [email protected] wrote:
Message: 3
Date: Sat, 18 Jun 2011 18:44:19 -0400
From: "J ZHANG" <[email protected]>
Subject: Re: [Jmol-users] File reader not found :Pdb
To: <[email protected]>
Message-ID: <5322CB4339EC4CCDBD84DB547D4B4D4F@JemisonHP>
Content-Type: text/plain; charset="iso-8859-1"
I tested the application under several browser from different system only
browsers from Ubuntu does not work, So I don't think some files are missing.
later, I found a solution for this problem : when use
jmolInitialize('./jmol12/',true); browsers from Ubuntu crashed, however switch
to jmolInitialize('./jmol12/'); solve the problem.
the only problem left now is some commands in jmol 12 do need signed Applet.
From: Robert Hanson
Sent: Friday, June 17, 2011 11:59 PM
To: [email protected]
Subject: Re: [Jmol-users] File reader not found :Pdb
You are missing some files. Just unload all the applet files into your
directory again.
2011/6/17 J ZHANG <[email protected]>
Hi, I am trying to deploy a jmol applet application on server, Browsers
(except IE 9 64-bit) on Windows 7, on Mac all pass the test ,and on linux like
centOS 5 also pass the test. but Ubuntu does not work and gives out message in
the applet :
File reader not found :Pdb
I already enabled the applet in Browser("Jmol_S" in the right bottom corner
of applet frame), sometime in the right bottom corner show the seconds[over
100s] of loading the Jmol applet.
Anyone knows how to fix it ? or anyone have met this problem?
Dr. Jonathan H. Gutow
Chemistry Department [email protected]
UW-Oshkosh Office: 920-424-1326
800 Algoma Boulevard FAX:920-424-2042
Oshkosh, WI 54901
http://www.uwosh.edu/facstaff/gutow
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