Am 08.07.2011 16:34, schrieb Rolf Huehne: > On 07/08/2011 04:04 PM, Reinhold Störmann wrote: >> Lets try to sort thesee things out correctly: >> >> 2. How can I verify that the signed applet is running and not the unsigned? >> > There are several indicators: > > 1) The first time you start the applet from a specific source there > should pop up a security warning dialog. If you accept running the > signed applet there it should run as a signed applet. If you don't > accept it will still run but only like the unsigned applet. > > 2) The usual "Jmol" text at the bottom right of the applet frame (called > "frank" within Jmol for some historical reason) is changed to a red > "Jmol_S". > > 3) If you open the applet menu (e.g. with right-click) and go to "About > Jmol" (or maybe it's translation to another language) then it is > indicated behind the jmol version number: > Jmol 11.6.8 (signed) > > (The "About Jmol" menu part changed in newer versions a little but I > would expect that this information will still be there). > > You can try running the signed applet from this URL: > http://www.imb-jena.de/cgi-bin/3d_mapping.pl?CODE=1deh&APPLET=signed This url really starts the signed applet. > There I invoke it explicitly: > jmolInitialize("/ImgLibPDB/jmol/jmol-11.6.8", "JmolAppletSigned0.jar"); I changed my code to invoke the signed applet explicityl as you did, but still the unsigned applet is loaded. Cannot figure out why.
Closed all browser windows, and started the browser anew to remove possible browser cache effects, still jmolInitialize(\"external/jmol\",\"JmolAppletSigned0.jar\") seems to load the unsigned applet. Here is the content of the java console: > Java Plug-in 1.6.0_25 > Verwendung der JRE-Version 1.6.0_25-b06 Java HotSpot(TM) Client VM > Home-Verzeichnis des Benutzers = C:\Users\cheops > > ---------------------------------------------------- > c: Konsole löschen > f: Objekte in Finalisierungswarteschlange finalisieren > g: Speicherbereinigung > h: Diese Hilfemeldung anzeigen > l: ClassLoader-Liste ausgeben > m: Speicherbelegung anzeigen > o: Protokollierung auslösen > q: Konsole ausblenden > r: Richtlinien-Konfiguration neu laden > s: System- und Bereitstellungseigenschaften ausgeben > t: Threadliste ausgeben > v: Thread-Stack ausgeben > x: ClassLoader-Cache löschen > 0-5: Trace-Stufe auf <n> setzen > ---------------------------------------------------- > > security: property package.access value > sun.,com.sun.xml.internal.ws.,com.sun.xml.internal.bind.,com.sun.imageio. > security: property package.access new value > sun.,com.sun.xml.internal.ws.,com.sun.xml.internal.bind.,com.sun.imageio.,com.sun.javaws > security: property package.access value > sun.,com.sun.xml.internal.ws.,com.sun.xml.internal.bind.,com.sun.imageio.,com.sun.javaws > security: property package.access new value > sun.,com.sun.xml.internal.ws.,com.sun.xml.internal.bind.,com.sun.imageio.,com.sun.javaws,com.sun.deploy > security: property package.access value > sun.,com.sun.xml.internal.ws.,com.sun.xml.internal.bind.,com.sun.imageio.,com.sun.javaws,com.sun.deploy > security: property package.access new value > sun.,com.sun.xml.internal.ws.,com.sun.xml.internal.bind.,com.sun.imageio.,com.sun.javaws,com.sun.deploy,com.sun.jnlp > security: property package.definition value null > security: property package.definition new value com.sun.javaws > security: property package.definition value com.sun.javaws > security: property package.definition new value > com.sun.javaws,com.sun.deploy > security: property package.definition value com.sun.javaws,com.sun.deploy > security: property package.definition new value > com.sun.javaws,com.sun.deploy,com.sun.jnlp > security: property package.access value > sun.,com.sun.xml.internal.ws.,com.sun.xml.internal.bind.,com.sun.imageio.,com.sun.javaws,com.sun.deploy,com.sun.jnlp > security: property package.access new value > sun.,com.sun.xml.internal.ws.,com.sun.xml.internal.bind.,com.sun.imageio.,com.sun.javaws,com.sun.deploy,com.sun.jnlp,org.mozilla.jss > security: property package.definition value > com.sun.javaws,com.sun.deploy,com.sun.jnlp > security: property package.definition new value > com.sun.javaws,com.sun.deploy,com.sun.jnlp,org.mozilla.jss > basic: Fortschritts-Listener hinzugefügt: > sun.plugin.util.GrayBoxPainter$GrayBoxProgressListener@1d05c81 > basic: Plugin2ClassLoader.addURL parent called for > http://localhost/local/fernandez/external/jmol/JmolApplet0.jar > security: Blacklist-Revocation-Check ist aktiviert. > security: Die Überprüfung der Liste vertrauenswürdiger Bibliotheken > ist aktiviert > network: Cache-Eintrag gefunden [url: > http://localhost/local/fernandez/external/jmol/JmolApplet0.jar, > Version: null] prevalidated=false/0 > network: Verbindung von > http://localhost/local/fernandez/external/jmol/JmolApplet0.jar mit > Proxy=DIRECT wird hergestellt > network: Verbindung von http://localhost:80/ mit Proxy=DIRECT wird > hergestellt > network: ResponseCode für > http://localhost/local/fernandez/external/jmol/JmolApplet0.jar: 304 > network: Codierung für > http://localhost/local/fernandez/external/jmol/JmolApplet0.jar: null > network: Verbindung mit > http://localhost/local/fernandez/external/jmol/JmolApplet0.jar trennen > cache: Reading Signers from 0 > http://localhost/local/fernandez/external/jmol/JmolApplet0.jar | > C:\Users\cheops\AppData\LocalLow\Sun\Java\Deployment\cache\6.0\42\23811d2a-78945b57.idx > network: Keine Zertifikatsinformationen für unsignierte JAR-Datei: > http://localhost/local/fernandez/external/jmol/JmolApplet0.jar > network: Keine Zertifikatsinformationen für unsignierte JAR-Datei: > http://localhost/local/fernandez/external/jmol/JmolApplet0.jar > cache: Read manifest for > http://localhost/local/fernandez/external/jmol/JmolApplet0.jar: > read=110 full=110 > network: Cache-Eintrag gefunden [url: > http://localhost/local/fernandez/external/jmol/JmolApplet0_i18n_de.jar, > Version: > null] prevalidated=false/0 > network: Verbindung von > http://localhost/local/fernandez/external/jmol/JmolApplet0_i18n_de.jar > mit Proxy=DIRECT wird hergestellt > network: ResponseCode für > http://localhost/local/fernandez/external/jmol/JmolApplet0_i18n_de.jar: 304 > network: Codierung für > http://localhost/local/fernandez/external/jmol/JmolApplet0_i18n_de.jar: null > network: Verbindung mit > http://localhost/local/fernandez/external/jmol/JmolApplet0_i18n_de.jar > trennen > cache: Reading Signers from 0 > http://localhost/local/fernandez/external/jmol/JmolApplet0_i18n_de.jar > | > C:\Users\cheops\AppData\LocalLow\Sun\Java\Deployment\cache\6.0\39\2f08b27-7548969e.idx > network: Keine Zertifikatsinformationen für unsignierte JAR-Datei: > http://localhost/local/fernandez/external/jmol/JmolApplet0_i18n_de.jar > network: Keine Zertifikatsinformationen für unsignierte JAR-Datei: > http://localhost/local/fernandez/external/jmol/JmolApplet0_i18n_de.jar > cache: Read manifest for > http://localhost/local/fernandez/external/jmol/JmolApplet0_i18n_de.jar: > read=145 > full=145 > basic: Applet geladen > basic: Applet resized and added to parent container > basic: PERF: AppletExecutionRunnable - applet.init() BEGIN ; jvmLaunch > dt 1324093 us, pluginInit dt 1757225 us, TotalTime: 3081318 us > basic: Applet initialized > basic: Fortschritts-Listener entfernt: > sun.plugin.util.GrayBoxPainter$GrayBoxProgressListener@1d05c81 > basic: Applet made visible > basic: Starting applet > basic: completed perf rollup > basic: Applet started > basic: Told clients applet is started > Jmol applet jmolAppletcation__135808828458818__ initializing > AppletRegistry.checkIn(jmolAppletcation__135808828458818__) > network: Cache-Eintrag gefunden [url: > http://localhost/local/fernandez/external/jmol/JmolApplet0_Popup.jar, > Version: null] prevalidated=false/0 > network: Verbindung von > http://localhost/local/fernandez/external/jmol/JmolApplet0_Popup.jar > mit Proxy=DIRECT wird hergestellt > network: ResponseCode für > http://localhost/local/fernandez/external/jmol/JmolApplet0_Popup.jar: 304 > network: Codierung für > http://localhost/local/fernandez/external/jmol/JmolApplet0_Popup.jar: null > network: Verbindung mit > http://localhost/local/fernandez/external/jmol/JmolApplet0_Popup.jar > trennen > cache: Reading Signers from 0 > http://localhost/local/fernandez/external/jmol/JmolApplet0_Popup.jar | > C:\Users\cheops\AppData\LocalLow\Sun\Java\Deployment\cache\6.0\43\35bf502b-4283b07d.idx > network: Keine Zertifikatsinformationen für unsignierte JAR-Datei: > http://localhost/local/fernandez/external/jmol/JmolApplet0_Popup.jar > network: Keine Zertifikatsinformationen für unsignierte JAR-Datei: > http://localhost/local/fernandez/external/jmol/JmolApplet0_Popup.jar > cache: Read manifest for > http://localhost/local/fernandez/external/jmol/JmolApplet0_Popup.jar: > read=124 full=124 > urlImage=jar:http://localhost/local/fernandez/external/jmol/JmolApplet0.jar!/jmol75x29x8.gif > 1714 script command tokens > applet context: -applet > appletDocumentBase=http://localhost/local/fernandez/showmodel.php?wheight=600&wwidth=700&model1=NF-90-small-pore&model2=IM14&model3=Cl > appletCodeBase=http://localhost/local/fernandez/external/jmol/ > (C) 2009 Jmol Development > Jmol Version: 12.0.39 2011-02-04 07:47 > java.vendor: Sun Microsystems Inc. > java.version: 1.6.0_25 > os.name: Windows Vista > memory: 4.6/16.3 > processors available: 2 > useCommandThread: false > appletId:jmolAppletcation__135808828458818__ > defaults = "Jmol" > backgroundColor = "#000000" > language=de > > FileManager.getAtomSetCollectionFromFile(models/NF-90-small-pore.pdb) > FileManager opening > http://localhost/local/fernandez/models/NF-90-small-pore.pdb > network: Cache-Eintrag gefunden [url: > http://localhost/local/fernandez/models/NF-90-small-pore.pdb, Version: > null] prevalidated=false/0 > network: Verbindung von > http://localhost/local/fernandez/models/NF-90-small-pore.pdb mit > Proxy=DIRECT wird hergestellt > network: ResponseCode für > http://localhost/local/fernandez/models/NF-90-small-pore.pdb: 304 > network: Codierung für > http://localhost/local/fernandez/models/NF-90-small-pore.pdb: null > network: Verbindung mit > http://localhost/local/fernandez/models/NF-90-small-pore.pdb trennen > The Resolver thinks Pdb > network: Cache-Eintrag gefunden [url: > http://localhost/local/fernandez/external/jmol/JmolApplet0_ReadersCifPdb.jar, > Version: null] prevalidated=false/0 > network: Verbindung von > http://localhost/local/fernandez/external/jmol/JmolApplet0_ReadersCifPdb.jar > mit Proxy=DIRECT wird hergestellt > network: ResponseCode für > http://localhost/local/fernandez/external/jmol/JmolApplet0_ReadersCifPdb.jar: > 304 > network: Codierung für > http://localhost/local/fernandez/external/jmol/JmolApplet0_ReadersCifPdb.jar: > null > network: Verbindung mit > http://localhost/local/fernandez/external/jmol/JmolApplet0_ReadersCifPdb.jar > trennen > cache: Reading Signers from 0 > http://localhost/local/fernandez/external/jmol/JmolApplet0_ReadersCifPdb.jar > | > C:\Users\cheops\AppData\LocalLow\Sun\Java\Deployment\cache\6.0\6\29fcb506-53fe8e3e.idx > network: Keine Zertifikatsinformationen für unsignierte JAR-Datei: > http://localhost/local/fernandez/external/jmol/JmolApplet0_ReadersCifPdb.jar > network: Keine Zertifikatsinformationen für unsignierte JAR-Datei: > http://localhost/local/fernandez/external/jmol/JmolApplet0_ReadersCifPdb.jar > cache: Read manifest for > http://localhost/local/fernandez/external/jmol/JmolApplet0_ReadersCifPdb.jar: > read=124 full=124 > Setting space group name to P 1 > openFile(models/NF-90-small-pore.pdb): 231 ms > reading 93 atoms > ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false > 1 model in this collection. Use getProperty "modelInfo" or getProperty > "auxiliaryInfo" to inspect them. > Default Van der Waals type for model set to Babel > ModelSet: not autobonding; use forceAutobond=true to force automatic > bond creation > network: Cache-Eintrag gefunden [url: > http://localhost/local/fernandez/external/jmol/JmolApplet0_ShapeBio.jar, > Version: null] prevalidated=false/0 > network: Verbindung von > http://localhost/local/fernandez/external/jmol/JmolApplet0_ShapeBio.jar mit > Proxy=DIRECT wird hergestellt > network: ResponseCode für > http://localhost/local/fernandez/external/jmol/JmolApplet0_ShapeBio.jar: > 304 > network: Codierung für > http://localhost/local/fernandez/external/jmol/JmolApplet0_ShapeBio.jar: > null > network: Verbindung mit > http://localhost/local/fernandez/external/jmol/JmolApplet0_ShapeBio.jar > trennen > cache: Reading Signers from 0 > http://localhost/local/fernandez/external/jmol/JmolApplet0_ShapeBio.jar | > C:\Users\cheops\AppData\LocalLow\Sun\Java\Deployment\cache\6.0\53\53463335-719bb7ea.idx > network: Keine Zertifikatsinformationen für unsignierte JAR-Datei: > http://localhost/local/fernandez/external/jmol/JmolApplet0_ShapeBio.jar > network: Keine Zertifikatsinformationen für unsignierte JAR-Datei: > http://localhost/local/fernandez/external/jmol/JmolApplet0_ShapeBio.jar > cache: Read manifest for > http://localhost/local/fernandez/external/jmol/JmolApplet0_ShapeBio.jar: > read=124 full=124 > ambientPercent = 45 > showMultipleBonds = false > allowRotateSelected = true > dragSelected = true > > FileManager.getAtomSetCollectionFromFile(models/IM14.pdb) > FileManager opening http://localhost/local/fernandez/models/IM14.pdb > network: Cache-Eintrag gefunden [url: > http://localhost/local/fernandez/models/IM14.pdb, Version: null] > prevalidated=false/0 > network: Verbindung von > http://localhost/local/fernandez/models/IM14.pdb mit Proxy=DIRECT wird > hergestellt > network: ResponseCode für > http://localhost/local/fernandez/models/IM14.pdb: 304 > network: Codierung für > http://localhost/local/fernandez/models/IM14.pdb: null > network: Verbindung mit > http://localhost/local/fernandez/models/IM14.pdb trennen > The Resolver thinks Pdb > Setting space group name to P 1 > openFile(models/IM14.pdb): 27 ms > reading 25 atoms > ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false > 1 models in this collection. Use getProperty "modelInfo" or > getProperty "auxiliaryInfo" to inspect them. > Default Van der Waals type for model set to Babel > ModelSet: not autobonding; use forceAutobond=true to force automatic > bond creation > 2 models > > > FileManager.getAtomSetCollectionFromFile(models/Cl.pdb) > FileManager opening http://localhost/local/fernandez/models/Cl.pdb > network: Cache-Eintrag gefunden [url: > http://localhost/local/fernandez/models/Cl.pdb, Version: null] > prevalidated=false/0 > network: Verbindung von http://localhost/local/fernandez/models/Cl.pdb > mit Proxy=DIRECT wird hergestellt > network: ResponseCode für > http://localhost/local/fernandez/models/Cl.pdb: 304 > network: Codierung für http://localhost/local/fernandez/models/Cl.pdb: > null > network: Verbindung mit http://localhost/local/fernandez/models/Cl.pdb > trennen > The Resolver thinks Pdb > Setting space group name to P 1 > openFile(models/Cl.pdb): 12 ms > reading 1 atoms > ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false > 1 models in this collection. Use getProperty "modelInfo" or > getProperty "auxiliaryInfo" to inspect them. > Default Van der Waals type for model set to Babel > Default Van der Waals type for model set to Jmol > Time to autoBond: 9 ms > ModelSet: autobonding; use autobond=false to not generate bonds > automatically > > Adding embedded #jmolscript: select ({118});backbone only;select *; > 3 models Maybe this helps finding the culprit. ------------------------------------------------------------------------------ All of the data generated in your IT infrastructure is seriously valuable. Why? It contains a definitive record of application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-d2d-c2 _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
