I am using the "compare" command to align 2 conformations of the same protein.
The effect
is great, but I would like to isolate the translation + rotation that is being
applied.
1. I load protein1.pdb (which I want to stay as it is oriented)
2. I load (append) protein2.pdb (which I want to align to the first)
3. frame all
4. compare {2.1} {1.1} SUBSET {protein} rotate translate //does a nice job,
moving model2
towards model 1
I can save everything to a JMOL file and it works nicely, but the file is much
larger than the
sum of the 2 original files. Also, I am losing some control on things I was
doing beforehand
on the first model (I'd prefer not to have to recalculate or redo my scripts).
To the point: what I would like is to have the rotation+translation that has
been applied to
model 2 during the compare command
Any way to extract that info?
Thanks
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