color property partialcharge range -1.0 1.0 # or whatever range you want.
I suspect that your range is way outside the default range -- even if one
atom is -10 it will turn all the others blue unless you set the absolute
range like that.
On Mon, Aug 29, 2011 at 10:22 AM, Martin Hediger <[email protected]> wrote:
> Hi Robert
>
> When I enter these two commands in a Jmol console, all charges turn blue.
> Even if many particles in the PQR file have opposite charge.
>
>
> set propertycolorscheme "bwr"
> color property partialcharge
>
>
> How would these commands be entered in a Jmol-Script? I.e. not in the
> shell.
>
> Thanks for your help
> Martin
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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