Can anyone suggest how best to select residues (or specified sets of atoms) that are buried? In a simple sense buried might mean "all atoms beneath the surface of the protein". Ideally, one would like to exclude pockets that connect with a water-permeable channel to the surface, but that is a refinement.
I am specifically interested in locating buried waters in 1w4y. In Jmol, the term "buried" is equivalent to the set of amino acids "ALA CYS ILE LEU MET PHE TRP VAL". That is not what I want. Thanks, Eric ------------------------------------------------------------------------------ Doing More with Less: The Next Generation Virtual Desktop What are the key obstacles that have prevented many mid-market businesses from deploying virtual desktops? How do next-generation virtual desktops provide companies an easier-to-deploy, easier-to-manage and more affordable virtual desktop model.http://www.accelacomm.com/jaw/sfnl/114/51426474/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
