Hello, Martin
The syntax has never been write("whatever"). It's
write <optional format specification> <filename>
if you omit the format spec (1st parameter), Jmol will guess from the
filename extension. That's why you are getting JPGs, I think; it
didn't understand pqr.
I think that PQR format has just been added by Bob, it wasn't there
before.
Please check the doc at
http://chemapps.stolaf.edu/jmol/docs/#writemodel
So,
write pqr myfile.txt;
write myfile.pqr;
should work the same
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