Hello Rohit 1. I have no experience in embedding Jmol within another applet or app, but I ahev experience using the Jmol applet. Are you aware of the Java security limitations when using the unsigned applet? It cannot access any folder for reading files. That might be your problem. http://wiki.jmol.org/index.php/Jmol_Applet#Unsigned_vs._Signed_Applet_ .26_Data_Access
2. Have you checked the Java Console for errors? Those may describe the cause. 3. I don't think that Jmol can output MOL2 files, only MOL, PDB and XYZ. http://chemapps.stolaf.edu/jmol/docs/#writemodel May I ask why do you need mol2? You could use a converter like OpenBabel. ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
