Dear Bob, 1. Yes indeed, I am able to save and restore coordinates (and I did not know I could do that!). However, what I wanted is to animate the restore, not to have it snap to the final position all at once. Is there some way to do that?
OK, here is a (crude?) idea. I am aligning a Salmonella protein with an Aquifex protein. I could load the Salmonella protein twice (so I have 3 models in Jmol). Then compare ROTATE TRANSLATE Salmonella to Aquifex. Then to UNDO/REVERSE animate: compare ROTATE TRANSLATE the relocated Salmonella with the extra copy of the same (not visible) Salmonella molecule that has not been moved. (I have not tried this yet.) 2. save COORD and restore COORD are not yet in the docs. 3. At examples-11, item 115, clicking the initial command gives JmolConstants.java ERROR: predefined set compile error:@tu nucleic & within(group,_a=48) compile error:end of expression expected Thanks, Eric At 12/4/11, Robert Hanson wrote: >oops! ><http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm?topic=115>http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm?topic=115 > >You have to save the initial coordinates, that's all. > > >On Sun, Dec 4, 2011 at 5:11 PM, Eric Martz ><<mailto:[email protected]>[email protected]> wrote: >I have two protein molecules loaded as two separate models. The >following compare command works wonderfully, producing an entrancing >alignment animation: > > >compare {1.1} {2.1} SUBSET {*.ca} ATOMS {71-165} {94-188} {166-357} >{624-815} ROTATE TRANSLATE > > >Question: > >What is the easiest way to produce the reverse animation, making the >aligned chain move smoothly away from the target chain, back to its >position before the compare command? > >Thanks, -Eric > > >------------------------------------------------------------------------------ >All the data continuously generated in your IT infrastructure >contains a definitive record of customers, application performance, >security threats, fraudulent activity, and more. Splunk takes this >data and makes sense of it. IT sense. And common sense. ><http://p.sf.net/sfu/splunk-novd2d>http://p.sf.net/sfu/splunk-novd2d >_______________________________________________ >Jmol-users mailing list ><mailto:[email protected]>[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > >-- >Robert M. Hanson >Professor of Chemistry >St. Olaf College >1520 St. Olaf Ave. >Northfield, MN 55057 ><http://www.stolaf.edu/people/hansonr>http://www.stolaf.edu/people/hansonr >phone: <tel:507-786-3107>507-786-3107 > > >If nature does not answer first what we want, >it is better to take what answer we get. > >-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > >-- >Robert M. Hanson >Professor of Chemistry >St. Olaf College >1520 St. Olaf Ave. >Northfield, MN 55057 ><http://www.stolaf.edu/people/hansonr>http://www.stolaf.edu/people/hansonr >phone: 507-786-3107 > > >If nature does not answer first what we want, >it is better to take what answer we get. > >-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >------------------------------------------------------------------------------ >All the data continuously generated in your IT infrastructure >contains a definitive record of customers, application performance, >security threats, fraudulent activity, and more. Splunk takes this >data and makes sense of it. IT sense. And common sense. >http://p.sf.net/sfu/splunk-novd2d >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
