The boundbox object can do this. You can set it to whatever size you want
and place it wherever you want, and then you can use
select within(boundbox)
On Thu, Dec 29, 2011 at 1:16 AM, Anasuya Dighe <[email protected]>wrote:
> Hello,
>
> How do i put an entire protein molecule inside a cube/grid with x-axis
> spanning
> till the
> largest x-coordinate, y-axis spanning till the largest y-coordinate, and
> z-axis
> spanning till the largest z-coordinate?
>
> Once i do this, can i divide the larger cube(i.e. the one holding the
> entire
> protein) into smaller ones of lesser dimensions? Say, 2A x 2A x 2A?
>
> Once i generate these smaller cubes, is there a way via Jmol, by which i
> can
> navigate through the protein molecule, (smaller)cube by (smaller)cube?
> As in, can Jmol be used to tell me which residues are lying in which
> (smaller)
> cube and so on?
>
> I am aware that it is possible to integrate objects like spheres and grids
> into
> Jmol, but i dont know how to address the following problem and visualise
> the
> same?
>
> Please let me know.
> Thanks,
> - Anasuya
>
>
> --
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