Ted,
Jmol.jar contains everything. JmolData.jar is stripped down for use from the
command line. Bob Hanson or someone else who uses it can tell you more about
it. Primarily it is intended for server side and helper application uses.
See: http://wiki.jmol.org/index.php/Files_Description#Notes
To get a .png out of Jmol.jar, you need to use script commands or the menus.
See: http://chemapps.stolaf.edu/jmol/docs/#writeimage,frames for the
description of the write command. The script you use will depend specifically
on the case you have. However try something like:
write PNG "filename"
This should write the current frame to a .png file.
Jonathan
On Jan 21, 2012, at 7:22 PM, Ted Cohen wrote:
> In your recent post about automated processing, you refered to JmolData.jar
> but Angel wrote back referencing Jmol.jar. I have googled for any information
> on Jmoldata.jar and did not find any.
>
> I have a need to create .png images from .pdb files.
> Could you send me the code that you use to get a .png
> from jmol and a bit of an explanation of what Jmoldata.jar is,
> how/if it relates to jmol.jar and where the documentation is for
> invoking it directly. I am assuming that typically, a user interacts
> with Jmol.jar (the pretty user interface) and JmolData.jar is called
> by the front end to do the heavy lifting?
>
> Thanks in advance,
> Ted
>
Dr. Jonathan H. Gutow
Chemistry Department gu...@uwosh.edu
UW-Oshkosh Office: 920-424-1326
800 Algoma Boulevard FAX:920-424-2042
Oshkosh, WI 54901
http://www.uwosh.edu/facstaff/gutow
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