Maybe you tried while I was uploading. Close, clear cache, and try again.
It certainly loads for me.
On Sun, Feb 12, 2012 at 8:23 PM, Philip Bays <[email protected]> wrote:
> Bob:
>
> In your examples link blow, the jspecview applet does not load for me in
> either Safari or Firefox. The error message indicates that the applet
> "cannot be found".
>
> Pbil
>
> On Feb 12, 2012, at 6:59 PM, Robert Hanson wrote:
>
> Thanks, Nico, for releasing 12.3.15. It's got one very big new feature and
> several others. As well as a few bug fixes.
>
> Primarily, JSpecView is now merged into Jmol. This means that the
> distribution of Jmol includes the JSpecView applet (jspecview.jar). and the
> JSpecView application is embedded in the Jmol application. You can view
> spectra and click on spectral peaks to display vibrations or mass spec
> fragments or to highlight atoms in NMR spectra. And, conversely, you can
> display vibrations or fragment models or click on atoms to see the
> corresponding spectrum. You can see it in operation at
> http://chemapps.stolaf.edu/jmol/docs/examples-12/jspecview/test1.html .
>
> This is all made possible by two new records Robert Lancashire has
> introduced into JCAMP-DX files. These add model data and peak assignments.
>
> #version=12.3.15
>
> # bug fix: SLAB unit cell not showing all lines
> # bug fix: CRYSTAL reader needs to change to MOLECULAR when X(ANGSTROMS)
> found (fullerene slab)
> # bug fix: Popup Menu item hbond calculate should not require PDB
>
> # new feature: context menu Spectra submenu
>
> (used for displaying spectral information from JDX files)
>
> # new feature: JSpecView integration into Jmol application and SYNC
> communication with applet
> # -- if model/peak-enhanced JDX file is read, clicking on an atom or
> switching
> # to an IR vibration or MS fragment displays the appropriately
> highlighted spectrum/fragment
> # new feature: JCAMP-DX file reading
> # -- reading of ##$MODELS and ##$PEAK_LINKS (see
> http://chemapps.stolaf.edu/jmol/docs/examples-12/jspecview)
>
> # new feature: model ID "..."
> # -- can be file-specific using "filename#..."
> # -- used for correlating non-Jmol synced applets
> # new feature: sync ~ 'Select: xxx'
> # -- xxx can include file="xxx" model="xxx" atoms="xxx" select="xxx"
> script="xxx"
> # -- file and model combined as model ID "file#model"
> # -- will automatically load the file if the given file#model ID is not
> found
> # -- atoms = list of atom numbers separated by commas: 1,2,3 --> @1 or @2
> or @3
> # -- select is any valid selection such as THR or 1-30
> # -- automatically adds "visible &" to atoms or select
> # -- requires sync ON
>
> # new feature: NFF neutral file format reader (
> http://paulbourke.net/dataformats/nff/nff1.html)
> # for electron microscopy data exported from IMOD
>
> # new feature: when picking struts or delete bond or measure, distance
> shows as per usual measurement
>
>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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>
> J. Philip Bays
> Emeritus Professor of Chemistry
> Department of Chemistry and Physics
> Saint Mary's College
> Notre Dame, IN 46556
> [email protected]
>
>
>
>
>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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