On Wed, Mar 14, 2012 at 11:31 AM, Eric Martz <[email protected]>wrote:
> Using Jmol 12.2.16, I am happy that I can create a sphere centered on
> the average position of one or more atoms. For example, these
> commands generate a sphere of radius 8 Angstroms centered around the
> alpha carbon atom of residue 64 in chain B, colored the same color as
> that atom:
>
> load =1d66
> color chain
> backbone only
> isosurface s1 center (64:b.ca) sphere 8 mesh nofill
> mycolor = {64:b.ca}.color
> color isosurface @mycolor
>
> Questions:
>
> 1. How do I display the spherical isosurface as contour lines? For
> example, this displays nothing:
>
> isosurface s1 center (64.ca) sphere 8 contour nofill
>
>
That's because you haven't mapped it with anything. contours are value
levels. First you have to use the MAP command to put some sort of data on
that sphere. What were expecting "contour" to do in this case?
> 2. Is there a way to change the mesh density?
>
>
"resolution"
> Thanks, -Eric
>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Virtualization & Cloud Management Using Capacity Planning
Cloud computing makes use of virtualization - but cloud computing
also focuses on allowing computing to be delivered as a service.
http://www.accelacomm.com/jaw/sfnl/114/51521223/
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