version=12.3.29
bug fix: Jmol 12.3.28 breaks writing JMOL/PNGJ files
-- Jmol 12.3.28 release DELETED and SHOULD NOT BE USED
bug fix: modelkit mode creating atoms after load "@x" fails
bug fix: script javascript:xxxx() broken for Jmol object javascript
bug fix: JmolCore.js fix for getPropertyAsArray
bug fix: draw arrows not adjustable using set picking draw
bug fix: Exception for select within(molecule,...) when atoms have been
deleted
# new feature: (JmolCore.js/JmolApplet.js/JmolCD.js/JmolApi.js)
# -- changes "useChemDoodleOnly" to "disableJmol"
# in preparation for non-ChemDoodle plug-ins similar to JmolCD.js
# -- allows for default values for Info
# -- adds Info.src
# -- similar to src in an <image src="xxx.png" /> tag
# -- turned into LOAD "xxx.png"
# -- more efficient coding
# new feature: set MESHSCALE (default 1) also allows isosurface/mo mesh
scaling
# -- was DOTSCALE in 12.3.26, but that is not appropriate
# new feature: Mopac archive reader, including internal coord. defs
# -- use FILTER "NOCENTER" to NOT center atoms in unit cell
# -- use CENTROID for complete molecules with centroids within unit cell
# -- use PACKED CENTROID for complete molecules with any atoms within unit
cell
# -- properties stored in auxiliaryInfo
# use getProperty auxiliaryInfo or x = getProperty("auxiliaryInfo".foo)
to retrieve
# new feature: set pathForAllFiles "..."
# -- all files, local or remote, will be taken from the indicated path
# -- the indicated path may be a zip file entry (ending with "|")
# -- automatically reset to '' in case of an unrecoverable error in
execution
# -- used for creating JMOL files containing user scripts instead of a
state
# -- disallows all writing and image creation
# -- scripts including prompts to read wildcard files (for example, "load
?")
# will still prompt for those and read them properly
# new feature: write SCRIPT ["scriptFileName", "filename2","filename3",...]
PNGJ|JMOL...
# -- syntax is WRITE SCRIPT followed by an array of file names
# then whatever else is necessary to create the PNGJ or JMOL file
# -- for example: write script ["wind.spt"] test.jmol
# -- Creates a single PNGJ or JMOL file that instead of containing the
state
# contains the script and additional files listed by the user.
# The first script is run, and it is presumed that the other files are
# needed for full execution of that script.
# -- Allows for creating PNGJ and JMOL files that run as animations, not
just final states.
# -- Jmol will automatically add any files current to the state,
# but other files not indicated by the state (script files especially)
# required for the script to run need to be indicated by the user.
# -- When the script is executed, pathForAllFiles is set to the zip file
# itself. Thus, even scripts containing references such as
"script2.spt" or "=xxxx"
# can be run, provided the user supplies script2.spt xxxx.pdb.gz as one
of the required filenames.
# -- Note that if a file is saved locally using LOAD =xxxx AS t.pdb, Jmol
will automatically use
# the local file reference to t.pdb, not the RCSB reference.
# -- If the file is loaded using only LOAD =xxxx, then Jmol will reload the
# remote file and store it in the PNGJ/JMOL file as xxxx.pdb.gz.
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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