Is there any way to map the "potential" of custom atom-properties to a
planar (square) isosurface as a color gradient?
Oliver
On Fri, Jun 8, 2012 at 6:12 PM, Oliver Stueker wrote:
> Hi Jmol-Community,
>
> it seems I am again kind of stuck. :-/
>
> I have some correlation data for a protein (1 value per residue) that
> I want to map on different isosurfaces.
>
> I have succeeded in mapping the data on Molecular (or VDW, SAS)
> surfaces, but now I am interested how things look like inside the
> protein by mapping these values onto cross-sections through the
> protein.
>
> But:
> ISOSURFACE my_iso PLANE {0 0 15} {0 1 15} {1 1 15} molecular MAP
> FULLPLANE property_correl
>
> gives me only a partial surface (see attached figure), although I
> would expect FULLPLANE would result in a bigger, square or rectangle
> plane.
>
> As a test case I have attached a Jmol-script that demonstrates this
> and the data-file needed.
>
> What I would like to see is something like:
> http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm?topic=6
> or
> http://chemapps.stolaf.edu/jmol/docs/examples-11/isosurface.htm?topic=28
> ( http://chemapps.stolaf.edu/jmol/docs/examples-11/img/molslice.jpg )
>
> I hope someone can enlighten me. :-)
>
> Best,
> Oliver
>
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