Maybe you did something slightly differently the first time. You
definitely need [ ] around a color:
var ccc = ['xD9FFFF', 'xCC80FF', 'xC2FF00', 'xFFB5B5', 'x909090'];
for (var j=1;j<6;j++); select resNo=j; color @{"[" + ccc[j] + "]"}; end for;
or
var ccc = ['[xD9FFFF]', '[xCC80FF]', '[xC2FF00]', '[xFFB5B5]', '[x909090]'];
for (var j=1;j<6;j++); select resNo=j; color @{ccc[j]}; end for;
On Mon, Aug 20, 2012 at 3:17 PM, Angel Herráez <[email protected]> wrote:
> Hi all
>
> I am trying to custom-color per residue in a pdb file (color group does not
> work here for some reason; it is not a protein chain but a collection of
> separate lipids)
>
> After several tries, this is working when entered in the console of Jmol app
> 12.2.17:
>
> var ccc = ['xD9FFFF', 'xCC80FF', 'xC2FF00', 'xFFB5B5', 'x909090'];
> for (var j=1;j<6;j++); select resNo=j; color @{ccc[j]}; end for;
>
> However, when I put it in a script file no coloring is applied.
> Why is the difference?
>
> (the example has been cut, I really have 55 residues so this can't be done
> manually)
>
> Thanks for any tips
>
>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
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