Hi Bob and Angel. Sorry for my late answer and thanks for your great support first. First i will update the JME applet and switch to JME format. my only purpose is for teaching and usefulness of the applet in class. Angel, by the way from the page u send me i can see that both work fine with cyclohexane. Sorry for the mistake over your name. Pino
>----Messaggio originale---- >Da: angel.herr...@uah.es >Data: 21/09/2012 17.20 >A: <jmol-users@lists.sourceforge.net> >Ogg: Re: [Jmol-users] (no subject) > >Hi Pino > >Yes, this problem has been there always with reading MOLfile data. As >Bob says, using the JME format for the transfer fixes it. You can see >both demonstrated in my page (compare the 2 buttons) >http://biomodel.uah.es/en/DIY/JME/JME.htm > >If you still need to use MOL (as I do in my pages that do not use JME >but other editors), the problem only affects a few very symmetrical >molecules like cyclohexane and tert-butane. > >I just had the idea of changing the Z coord of one of the atoms (to >break the symmetry) and it works for cyclohexane, see >http://biomodel.uah.es/en/DIY/JME/JME2.htm > >but not for tert-butane as Jmol wrongly interprets tertiary carbons >as planar (there was discussion about this some time ago and I guess >some conclusion that I cannot remember, but I could not find a >solution to apply to my page --but this is another issue.) > > >PS: Could you please ammend my name in your page? Thanks > > > >------------------------------------------------------------------------------ >Got visibility? >Most devs has no idea what their production app looks like. >Find out how fast your code is with AppDynamics Lite. >http://ad.doubleclick.net/clk;262219671;13503038;y? >http://info.appdynamics.com/FreeJavaPerformanceDownload.html >_______________________________________________ >Jmol-users mailing list >Jmol-users@lists.sourceforge.net >https://lists.sourceforge.net/lists/listinfo/jmol-users > ------------------------------------------------------------------------------ Got visibility? Most devs has no idea what their production app looks like. Find out how fast your code is with AppDynamics Lite. http://ad.doubleclick.net/clk;262219671;13503038;y? http://info.appdynamics.com/FreeJavaPerformanceDownload.html _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
