Thanks you. This works especially great in combination with the connect
command.
Best
Sridhar
On 8 October 2012 16:14, Robert Hanson <[email protected]> wrote:
> Easily!
>
> If you don't care to choose the color yourself, you can use
>
> color {*} property bondCount
>
> Or you could specifically color a given coordination number with one of
> the ways to designate a color:
>
> {bondCount=6}.color = "red"
> {bondCount=4}.color = "[xFF00FF]"
> {bondCount=5}.color = {200 100 200}
> {bondCount=3}.color = {0.8 0.2 0.1}
>
> Or, alternatively, you could set up your own color scheme:
>
> color {*} property bondcount "myscheme=red blue orange green"
>
>
>
> Bob Hanson
>
> On Mon, Oct 8, 2012 at 7:42 AM, Sridhar Neelamraju <
> [email protected]> wrote:
>
>> Dear all,
>> I have been struggling with this for a while now. The information I have
>> is the coordinates and coordination number of each atom in a 10000 atom
>> system (e.g. x y z cn). I want to color code the atoms by coordination
>> number. For e.g. say all atoms with a CN of 4 as red, 6 as blue, 12 as
>> green, etc.
>>
>> Could this be achieved using jmol? I am happy to put my data in any
>> format that jmol reads (xyz, pdb, etc.).
>>
>> Thank you, and warm regards,
>> Sridhar
>>
>>
>> ------------------------------------------------------------------------------
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>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
>
> ------------------------------------------------------------------------------
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> Deploy New Relic app performance management and know exactly
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> Try New Relic at no cost today and get our sweet Data Nerd shirt too!
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