Dear all, I would like to use JmolData.jar for the analysis of several thousand PDB structures. Until now I used the strategy to start Jmol individually for each structure for automatic image generation for all PDB structures (or only new/updated structures). But this raises the processing time by a factor of 10 (or more) because starting Java and Jmol takes about 1 second while loading a new structure took about 100 milliseconds on average within a test set of about 500 structures. For some structures Jmol needs only 5 to 10 milliseconds. So the gain might be even much larger, depending on the set of structures.
Because Jmol scripting developed a lot since version 11.x (when I last developed something like this) I am wondering if it would now be possible to make a Jmol script error resistant (although I havn't found anything about this in the documentation or with Google)? In my case the idea would be to have a user-defined JmolScript function that would load a new structure and do some analysis. This function would be called for a list of structure files from a Jmol script. If an error would occur within the function (for example a load error) a specific customized error message would pe provided and the script would continue with the next structure. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: [email protected] Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 296, Amtsgericht Jena Tax Number: 162/141/08228 ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_sfd2d_oct _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
