On 11/21/2012 06:02 PM, Robert Hanson wrote:
> Well, it's been a busy three months! Hard to believe that I started this
> Aug 26, and we basically now have a fully functional Jmol applet without
> Java.
>
> I have updated http://chemapps.stolaf.edu/jmol/jsmol.zip
>
I tried the new version but Firefox stops while loading 'core.z.js'
with the following error message:
Timestamp: 11/21/2012 07:03:37 PM
Error: SyntaxError: illegal character
Source File: file:///jsmol_2012_11_21/jsmol/j2s/java/core.z.js
Line: 4110, Column: 1
Source Code:
Clazz.declarePackage ("java.net");
This might be related to another error message:
Timestamp: 11/21/2012 07:03:37 PM
Error: The character encoding of the HTML document was not declared. The
document will render with garbled text in some browser configurations if
the document contains characters from outside the US-ASCII range. The
character encoding of the page must to be declared in the document or in
the transfer protocol.
Source File: file:///jsmol_2012_11_21/jsmol/test2-rh.html
Line: 0
Q: What would be the appropriate character encoding setting for JSmol?
> Probably the main drawback of JavaScript is going to show up with large
> canvases (1000x1000 or larger), especially with antialiasing or
> translucency. This could be a problem, since JavaScript is still an order
> of magnitude slower than Java.
>
Also medium-sized or large protein structures will be a problem. It
might be wise to load these structures with the "alpha carbon only" filter.
Q: How can a script detect if it is running in JSmol or Jmol?
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
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