However I cannot fix the monitor (black) by double clicking on the 2nd atom. The first click erases the red monitor line. Therefore I cannot measure angles or dihedral angles either.
This inability to fix monitor lines with the mouse is true in Safari, Firefox and Chrome in Apple OX 10.6.8 with Javaa 1.6.0_39, and in Internet Explorer, Firefox and Chrome in Windows 7 with Java 1.7.0_13.
Fixing the monitor line with the mouse also fails at
http://chemapps.stolaf.edu/jmol/docs/examples-12/simple.htm
(Jmol 13.1.11 signed applet).
Fixing the monitor line with the mouse works correctly in Jmol application 13.0.1 and 13.0.12.
Therefore there seems to be a difference between the application and the applet for this function.
However, fixing the monitor line with the mouse works correctly in Jmol unsigned applet 12.2.30 with the same Java (in Mac Safari). Therefore the function in the applet seems to have been lost between 12.2 and 13.0.
Eric
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