Since when are they sp2 ? ;)
On Mon, Mar 11, 2013 at 12:40 PM, Pshemak Maslak <[email protected]> wrote:
> On 3/11/2013 12:58 PM, Robert Hanson wrote:
>
> Good catch, Michael. Yes, it's specifically a problem with "-sp3d" --
> easily fixed.
>
> See http://chemapps.stolaf.edu/jmol/Jmol-13.zip and
> http://chemapps.stolaf.edu/jmol/jsmol.zip
>
>
> Bob
>
>
> I have lcaocartoon-related questions. For CO2 (for example) the sp2 lone
> pair lobes are shown as the sp lobes instead. Similar outcome is observed
> for other linear molecules. Is that a general limitation?
>
> I know that the cartoons lobes can be drawn and oriented (per demand)
> using "isosurface" command, but the lonepair dots are much harder if one
> wants them to keep up with molecular rotations and not eclipse each other
> at some orientations.
>
> Is there a simple way to deal with these issues?
>
> Thanks,
>
> PM
>
>
>
>
>
>
>
> On Sun, Mar 10, 2013 at 2:19 PM, Michael Evans <[email protected]>wrote:
>
>> Jmol'ers,
>> I am having trouble using lcaocartoon in a very specific case. If you
>> look on this page, the antibonding orbitals render fine:
>>
>> http://butane.chem.illinois.edu/jsmoore/Experimental/DFE.html
>>
>> However, on this updated version of the same page using either JSmol or
>> Jmol 13.0.12, the last antibonding orbitals (C3-H6 and C2-H8) fail to
>> render properly.
>>
>>
>> http://www.metallacycle.com/lec/chem332/jmolpages/difluoroethane/?use=java
>>
>> Those last antibonding orbitals use the "-sp3d" lobe, which appears not
>> to render properly no matter what I try. I even tried back here with no
>> success:
>>
>> http://chemapps.stolaf.edu/jmol/docs/examples-12/new.htm
>>
>> An sp3d lobe renders fine, but nothing happens when I try lcaocartoon
>> create "-sp3d". Am I missing something?
>>
>> Cheers, Mike
>>
>> ---
>> Michael Evans
>> Department of Chemistry
>> University of Illinois, Urbana-Champaign
>>
>>
>> ------------------------------------------------------------------------------
>> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
>> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
>> endpoint security space. For insight on selecting the right partner to
>> tackle endpoint security challenges, access the full report.
>> http://p.sf.net/sfu/symantec-dev2dev
>> _______________________________________________
>> Jmol-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
> ------------------------------------------------------------------------------
> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
> endpoint security space. For insight on selecting the right partner to
> tackle endpoint security challenges, access the full report.
> http://p.sf.net/sfu/symantec-dev2dev
>
>
>
> _______________________________________________
> Jmol-users mailing
> [email protected]https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
>
> ------------------------------------------------------------------------------
> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
> endpoint security space. For insight on selecting the right partner to
> tackle endpoint security challenges, access the full report.
> http://p.sf.net/sfu/symantec-dev2dev
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
endpoint security space. For insight on selecting the right partner to
tackle endpoint security challenges, access the full report.
http://p.sf.net/sfu/symantec-dev2dev
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
