cool. Thanks!
Am 03.04.2013 um 19:50 schrieb Robert Hanson:
> This is done. See http://chemapps.stolaf.edu/jmol/Jmol-13.zip
>
> ___JmolDate="$Date: 2013-04-03 12:40:49 -0500 (Wed, 03 Apr 2013) $"
> ___JmolVersion="13.1.15_dev_2013.04.03"
>
> new feature: Jmol/JmolData application -I flag accepts input from System.in
> and command piping:
>
> type t.spt | jmol -I start Jmol with this script
>
> Note: if you use a pipe, be sure to make "exitJmol" the
> last command of the script
>
> Add -o for output to System.out. Without the pipe, we are
> going to control Jmol
> from a Jmol> prompt on the
> command line console
>
> jmol -Io see messages on input console
> ...messages from Jmol
> Jmol> background red;load 1crn.pdb;....
> ...messages from Jmol
> Jmol> exitJmol
>
> Add -n for headless operation (will not exit automatically).
>
> type t.spt | jmol -Ion
>
> Note: if you use a pipe, be sure to make "exitJmol" the
> last command of the script
>
> Add -i for silent operation (no writing to System.output).
>
>
> bug fix: {;...;} syntax does not work in 13.1
>
>
>
>
>
> On Fri, Mar 22, 2013 at 3:30 AM, Paolo Tosco <[email protected]> wrote:
> Dear all,
>
> is there a way to pipe commands into Jmol?
> For instance, PyMOL has a "-p" command line option which allows this. I
> use this feature in Open3DQSAR/Open3DALIGN to visualize molecules and
> update the PyMOL viewport while the program is running: thus, PyMOL acts
> as the graphical front-end of my command line tool, somehow, and the
> program keeps piping commands until it quits.
> Jmol has the "-s -" option, but commands entered on stdin are not
> executed until EOF is met (i.e., until you press CTRL+D).
>
> Is there a way to make Jmol execute commands after each newline, while
> keeping listening on stdin, and quitting when EOF is met, as does PyMOL
> with the "-p" option? I would very much like to implement Jmol as an
> alternative front-end for Open3DQSAR/Open3DALIGN, and this feature would
> enable me to do that very smoothly.
>
> Thanks, best regards
> Paolo
>
> --
> ==========================================================
> Paolo Tosco, Ph.D.
> Department of Drug Science and Technology
> Via Pietro Giuria, 9 - 10125 Torino (Italy)
> Tel: +39 011 670 7680 | Mob: +39 348 5537206
> Fax: +39 011 670 7687 | E-mail: [email protected]
> http://open3dqsar.org | http://open3dalign.org
> ==========================================================
>
>
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>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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