Michael, it's in the doc:
http://chemapps.stolaf.edu/jmol/docs/#calculate
calculate HYDROGENS [atom-expression]{default: *}
Adds hydrogens at calculated positions based on bonding patterns at the
designated atoms or, if no atoms are specified, at all atoms. Note that this
command is not intended to be used for the assignment of hydrogen atoms
in proteins. In order to work, all atoms must have any formal charges already
designated, and all multiple bonds must be in place.
------------------------------------------------------------------------------
Minimize network downtime and maximize team effectiveness.
Reduce network management and security costs.Learn how to hire
the most talented Cisco Certified professionals. Visit the
Employer Resources Portal
http://www.cisco.com/web/learning/employer_resources/index.html
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
