Thanks, Angel. Your suggestion will not meet my needs because:

The atoms connected by hbonds are not necessarily 
visible. Typical example, hbonds between water 
and protein when water is not visible. These 
hbonds can be visible nevertheless.

The models usually do not have hydrogen atoms. 
(Nor to I want to "calculate hydrogen" in most cases.)

Any other ideas?

At 6/18/13, Angel Herráez wrote:
>Dear Eric,
>
>you can try something like
>
>print {visible and _H and connected(hbond)}.size
>
>
>
>
>------------------------------------------------------------------------------
>This SF.net email is sponsored by Windows:
>
>Build for Windows Store.
>
>http://p.sf.net/sfu/windows-dev2dev
>_______________________________________________
>Jmol-users mailing list
>[email protected]
>https://lists.sourceforge.net/lists/listinfo/jmol-users


------------------------------------------------------------------------------
This SF.net email is sponsored by Windows:

Build for Windows Store.

http://p.sf.net/sfu/windows-dev2dev
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users

Reply via email to